AT4G12600

Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Gene families : OG0002183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002183_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G12600

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00103630	evm_27.TU.AmTr_v1...	RNA processing.RNA modification.rRNA/tRNA...	0.04	OrthoFinder output from all 47 species
AMTR_s00043p00189790	evm_27.TU.AmTr_v1...	RNA processing.RNA modification.rRNA/tRNA...	0.1	OrthoFinder output from all 47 species
Ala_g06081	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Als_g39727	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Aob_g01042	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene59957.t1	Aspi01Gene59957	component *(Snu13) of snoRNP rRNA methylation complex &...	0.05	OrthoFinder output from all 47 species
Azfi_s0280.g062289	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.06	OrthoFinder output from all 47 species
Ceric.03G070800.1	Ceric.03G070800	component *(Snu13) of snoRNP rRNA methylation complex &...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000600.11	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.03	OrthoFinder output from all 47 species
Cre06.g249250	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.23	OrthoFinder output from all 47 species
Dac_g02506	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.04	OrthoFinder output from all 47 species
Dcu_g19050	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
GSVIVT01015520001	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.03	OrthoFinder output from all 47 species
GSVIVT01016438001	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.03	OrthoFinder output from all 47 species
Gb_01849	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.11	OrthoFinder output from all 47 species
LOC_Os03g13800.1	LOC_Os03g13800	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.22	OrthoFinder output from all 47 species
LOC_Os10g03540.1	LOC_Os10g03540	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.04	OrthoFinder output from all 47 species
Lfl_g21991	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.08	OrthoFinder output from all 47 species
MA_10201g0010	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.04	OrthoFinder output from all 47 species
MA_16906g0010	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.16	OrthoFinder output from all 47 species
MA_433779g0010	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.18	OrthoFinder output from all 47 species
Mp7g12360.1	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.04	OrthoFinder output from all 47 species
Nbi_g28965	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.05	OrthoFinder output from all 47 species
Pir_g06572	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.03	OrthoFinder output from all 47 species
Pir_g09212	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Pp3c14_21860V3.1	Pp3c14_21860	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.03	OrthoFinder output from all 47 species
Pp3c17_18010V3.1	Pp3c17_18010	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.02	OrthoFinder output from all 47 species
Pp3c1_37110V3.1	Pp3c1_37110	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.01	OrthoFinder output from all 47 species
Sam_g08742	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.23	OrthoFinder output from all 47 species
Sam_g08743	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.1	OrthoFinder output from all 47 species
Smo159569	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.05	OrthoFinder output from all 47 species
Solyc09g011420.3.1	Solyc09g011420	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.06	OrthoFinder output from all 47 species
Spa_g42722	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.05	OrthoFinder output from all 47 species
Spa_g56417	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.03	OrthoFinder output from all 47 species
Tin_g17080	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.04	OrthoFinder output from all 47 species
Tin_g30682	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e001004_P001	Zm00001e001004	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.08	OrthoFinder output from all 47 species
Zm00001e038611_P002	Zm00001e038611	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.21	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006164	purine nucleotide biosynthetic process	RCA	Interproscan
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000741	karyogamy	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004407	histone deacetylase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005763	mitochondrial small ribosomal subunit	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0019213	deacetylase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0033558	protein lysine deacetylase activity	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048569	post-embryonic animal organ development	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0097306	cellular response to alcohol	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45	23	111

External Links

No external refs found!

AT4G12600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation