AT4G00180 (YAB3)

Aliases : YAB3

Description : Plant-specific transcription factor YABBY family protein

Gene families : OG0002690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002690_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G00180

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00199030	CRC,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00085p00032940	AFO, YAB1, FIL,...	RNA biosynthesis.transcriptional activation.C2C2...	0.07	OrthoFinder output from all 47 species
AT1G23420	INO	Plant-specific transcription factor YABBY family protein	0.03	OrthoFinder output from all 47 species
GSVIVT01012246001	CRC	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
GSVIVT01015567001	YAB5	RNA biosynthesis.transcriptional activation.C2C2...	0.08	OrthoFinder output from all 47 species
GSVIVT01037533001	YAB2	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
LOC_Os03g11600.1	CRC, LOC_Os03g11600	transcription factor (YABBY)	0.04	OrthoFinder output from all 47 species
LOC_Os10g36420.1	AFO, YAB1, FIL,...	transcription factor (YABBY)	0.06	OrthoFinder output from all 47 species
Zm00001e007412_P003	AFO, YAB1, FIL,...	transcription factor (YABBY)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010154	fruit development	IMP	Interproscan
BP	GO:0010158	abaxial cell fate specification	IGI	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
CC	GO:0000793	condensed chromosome	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0002237	response to molecule of bacterial origin	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006544	glycine metabolic process	IEP	HCCA
BP	GO:0006546	glycine catabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006636	unsaturated fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006733	obsolete oxidoreduction coenzyme metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0008285	negative regulation of cell population proliferation	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0009071	serine family amino acid catabolic process	IEP	HCCA
BP	GO:0009106	lipoate metabolic process	IEP	HCCA
BP	GO:0009108	obsolete coenzyme biosynthetic process	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009798	axis specification	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009826	unidimensional cell growth	IEP	HCCA
BP	GO:0009838	abscission	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009932	cell tip growth	IEP	HCCA
BP	GO:0009934	regulation of meristem structural organization	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009946	proximal/distal axis specification	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010103	stomatal complex morphogenesis	IEP	HCCA
BP	GO:0010227	floral organ abscission	IEP	HCCA
BP	GO:0010338	leaf formation	IEP	HCCA
BP	GO:0010371	regulation of gibberellin biosynthetic process	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0010480	microsporocyte differentiation	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016108	tetraterpenoid metabolic process	IEP	HCCA
BP	GO:0016109	tetraterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016116	carotenoid metabolic process	IEP	HCCA
BP	GO:0016117	carotenoid biosynthetic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016556	mRNA modification	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0019216	regulation of lipid metabolic process	IEP	HCCA
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030497	fatty acid elongation	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0031407	oxylipin metabolic process	IEP	HCCA
BP	GO:0031408	oxylipin biosynthetic process	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0033559	unsaturated fatty acid metabolic process	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043455	regulation of secondary metabolic process	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048533	sporocyte differentiation	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0048859	formation of anatomical boundary	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0090470	shoot organ boundary specification	IEP	HCCA
BP	GO:0090626	plant epidermis morphogenesis	IEP	HCCA
BP	GO:0090691	formation of plant organ boundary	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006780	YABBY	21	201

External Links

No external refs found!

AT4G00180 (YAB3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation