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AT3G60860


Description : SEC7-like guanine nucleotide exchange family protein


Gene families : OG0001094 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001094_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G60860
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00145310 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder output from all 47 species
AMTR_s00022p00145800 evm_27.TU.AmTr_v1... Brefeldin A-inhibited guanine nucleotide-exchange... 0.03 OrthoFinder output from all 47 species
AMTR_s00041p00031550 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 OrthoFinder output from all 47 species
AMTR_s00131p00043500 ATMIN7, BEN1,... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
Adi_g019376 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.07 OrthoFinder output from all 47 species
Adi_g019462 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Aev_g01609 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.05 OrthoFinder output from all 47 species
Aev_g05544 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.05 OrthoFinder output from all 47 species
Aev_g18005 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Ala_g02716 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.07 OrthoFinder output from all 47 species
Ala_g11392 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Als_g01210 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.08 OrthoFinder output from all 47 species
Als_g01216 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.02 OrthoFinder output from all 47 species
Aob_g07437 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.07 OrthoFinder output from all 47 species
Aop_g08234 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.04 OrthoFinder output from all 47 species
Aop_g37895 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene06196.t1 ATMIN7, BEN1,... ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013898 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.1 OrthoFinder output from all 47 species
Azfi_s0048.g030483 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.06 OrthoFinder output from all 47 species
Azfi_s0199.g057483 EDA10 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.04 OrthoFinder output from all 47 species
Cba_g01354 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.04 OrthoFinder output from all 47 species
Cba_g14684 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Ceric.10G045100.1 Ceric.10G045100 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.04 OrthoFinder output from all 47 species
Ceric.35G045800.1 ATMIN7, BEN1,... ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.23 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Cre09.g390319 EDA10 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder output from all 47 species
Dac_g10967 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.02 OrthoFinder output from all 47 species
Dcu_g05847 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.1 OrthoFinder output from all 47 species
Dcu_g10762 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.1 OrthoFinder output from all 47 species
Dde_g10500 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Dde_g21336 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Ehy_g17896 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01014993001 ATMIN7, BEN1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.1 OrthoFinder output from all 47 species
GSVIVT01023854001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.16 OrthoFinder output from all 47 species
GSVIVT01027623001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.1 OrthoFinder output from all 47 species
Gb_04048 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.1 OrthoFinder output from all 47 species
Gb_07642 ATMIN7, BEN1 BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.14 OrthoFinder output from all 47 species
Gb_26513 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.12 OrthoFinder output from all 47 species
LOC_Os03g14260.1 LOC_Os03g14260 BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.13 OrthoFinder output from all 47 species
LOC_Os07g37750.1 ATMIN7, BEN1,... BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.15 OrthoFinder output from all 47 species
Len_g10327 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.05 OrthoFinder output from all 47 species
Len_g23975 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Lfl_g02471 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.15 OrthoFinder output from all 47 species
Lfl_g04291 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.04 OrthoFinder output from all 47 species
MA_10429864g0010 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.11 OrthoFinder output from all 47 species
MA_157279g0010 EDA10 Brefeldin A-inhibited guanine nucleotide-exchange... 0.03 OrthoFinder output from all 47 species
MA_20138g0010 ATMIN7, BEN1 BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.1 OrthoFinder output from all 47 species
MA_20138g0020 ATMIN7, BEN1 Brefeldin A-inhibited guanine nucleotide-exchange... 0.08 OrthoFinder output from all 47 species
MA_20563g0010 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.08 OrthoFinder output from all 47 species
MA_9806849g0010 No alias Brefeldin A-inhibited guanine nucleotide-exchange... 0.1 OrthoFinder output from all 47 species
Mp7g11590.1 ATMIN7, BEN1 BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.16 OrthoFinder output from all 47 species
Mp8g18220.1 No alias BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.16 OrthoFinder output from all 47 species
Msp_g22519 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.05 OrthoFinder output from all 47 species
Nbi_g01508 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.06 OrthoFinder output from all 47 species
Ore_g16676 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.1 OrthoFinder output from all 47 species
Ore_g29633 EDA10 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.06 OrthoFinder output from all 47 species
Ore_g30550 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.05 OrthoFinder output from all 47 species
Pir_g10472 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.05 OrthoFinder output from all 47 species
Ppi_g01418 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Ppi_g01422 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010565 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012257 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018598 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.07 OrthoFinder output from all 47 species
Sam_g11624 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.05 OrthoFinder output from all 47 species
Sam_g29233 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.04 OrthoFinder output from all 47 species
Smo173646 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.11 OrthoFinder output from all 47 species
Smo85621 ATMIN7, BEN1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 OrthoFinder output from all 47 species
Solyc01g091460.3.1 Solyc01g091460 BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.16 OrthoFinder output from all 47 species
Solyc01g112340.3.1 Solyc01g112340 Brefeldin A-inhibited guanine nucleotide-exchange... 0.09 OrthoFinder output from all 47 species
Solyc01g112350.3.1 Solyc01g112350 BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.14 OrthoFinder output from all 47 species
Solyc12g017830.3.1 ATMIN7, BEN1,... BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.18 OrthoFinder output from all 47 species
Tin_g02915 ATMIN7, BEN1 ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.04 OrthoFinder output from all 47 species
Tin_g03558 No alias ARF-GTPase guanyl-nucleotide exchange factor *(BIG) &... 0.03 OrthoFinder output from all 47 species
Zm00001e001058_P001 Zm00001e001058 BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.14 OrthoFinder output from all 47 species
Zm00001e010568_P001 ATMIN7, BEN1,... BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.16 OrthoFinder output from all 47 species
Zm00001e025045_P001 Zm00001e025045 BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.03 OrthoFinder output from all 47 species
Zm00001e037574_P001 Zm00001e037574 BIG-type ARF-GTPase guanyl-nucleotide exchange factor 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity ISS Interproscan
CC GO:0005737 cytoplasm IBA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0016192 vesicle-mediated transport IBA Interproscan
BP GO:0050790 regulation of catalytic activity IBA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
CC GO:0000325 plant-type vacuole IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000919 cell plate assembly IEP HCCA
CC GO:0000932 P-body IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004430 1-phosphatidylinositol 4-kinase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
CC GO:0005769 early endosome IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0010071 root meristem specification IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015662 P-type ion transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0032870 cellular response to hormone stimulus IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
CC GO:0048471 perinuclear region of cytoplasm IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
MF GO:0051015 actin filament binding IEP HCCA
BP GO:0051211 anisotropic cell growth IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0052742 phosphatidylinositol kinase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
MF GO:0070273 phosphatidylinositol-4-phosphate binding IEP HCCA
MF GO:0070300 phosphatidic acid binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071365 cellular response to auxin stimulus IEP HCCA
BP GO:0071495 cellular response to endogenous stimulus IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140358 P-type transmembrane transporter activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032629 DCB_dom 6 217
IPR032691 Mon2/Sec7/BIG1-like_HUS 346 504
IPR000904 Sec7_dom 618 799
IPR032817 Mon2_C 1346 1419
IPR015403 Mon2/Sec7/BIG1-like_HDS 1166 1248
No external refs found!