AT3G57150 (CBF5, AtCBF5, NAP57, AtNAP57)

Aliases : CBF5, AtCBF5, NAP57, AtNAP57

Description : homologue of NAP57

Gene families : OG0004128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004128_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G57150

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00253700	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.04	OrthoFinder output from all 47 species
Adi_g018158	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Aop_g04269	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.05	OrthoFinder output from all 47 species
Ceric.36G038600.1	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000553.10	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.04	OrthoFinder output from all 47 species
Cre03.g172950	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.08	OrthoFinder output from all 47 species
Ehy_g09120	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.04	OrthoFinder output from all 47 species
GSVIVT01034188001	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.04	OrthoFinder output from all 47 species
Gb_32372	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.08	OrthoFinder output from all 47 species
Gb_34541	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.04	OrthoFinder output from all 47 species
Lfl_g10584	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
MA_27456g0030	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.06	OrthoFinder output from all 47 species
Mp4g12650.1	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.04	OrthoFinder output from all 47 species
Nbi_g03051	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Sam_g17675	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Smo81986	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.03	OrthoFinder output from all 47 species
Solyc02g081810.4.1	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.13	OrthoFinder output from all 47 species
Spa_g05917	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Tin_g32083	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Zm00001e017259_P001	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.06	OrthoFinder output from all 47 species
Zm00001e025570_P001	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.05	OrthoFinder output from all 47 species
Zm00001e035655_P001	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006164	purine nucleotide biosynthetic process	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	ISS	Interproscan
MF	GO:0009982	pseudouridine synthase activity	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000266	mitochondrial fission	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000741	karyogamy	IEP	HCCA
BP	GO:0000919	cell plate assembly	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005680	anaphase-promoting complex	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007005	mitochondrion organization	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009561	megagametogenesis	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009920	cell plate formation involved in plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048444	floral organ morphogenesis	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0060321	acceptance of pollen	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002501	PsdUridine_synth_N	101	217
IPR012960	Dyskerin-like	40	97
IPR032819	TruB_C	218	284
IPR002478	PUA	288	360

External Links

No external refs found!

AT3G57150 (CBF5, AtCBF5, NAP57, AtNAP57)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation