1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G55340

AT3G55340 (PHIP1)


Aliases : PHIP1

Description : phragmoplastin interacting protein 1


Gene families : OG0002968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002968_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G55340

Target Alias Description ECC score Gene Family Method Actions
Adi_g088433 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Aev_g16133 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.02 OrthoFinder output from all 47 species
Als_g13058 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.30G065200.1 PHIP1, Ceric.30G065200 phragmoplastin-interacting factor *(PHIP1) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000441.24 No alias Nucleolin 1 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Cre10.g466450 No alias No description available 0.1 OrthoFinder output from all 47 species
Dcu_g10091 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Gb_35169 PHIP1 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os03g03140.1 PHIP1, LOC_Os03g03140 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os05g02400.1 PHIP1, LOC_Os05g02400 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Mp3g24090.1 PHIP1 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.09 OrthoFinder output from all 47 species
Pir_g18421 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g07863 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0174.g024533 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g25025 No alias phragmoplastin-interacting factor *(PHIP1) & original... 0.02 OrthoFinder output from all 47 species
Solyc06g018110.3.1 PHIP1, Solyc06g018110 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Tin_g12583 PHIP1 phragmoplasTin-interacTing factor *(PHIP1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e029603_P002 PHIP1, Zm00001e029603 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003729 mRNA binding IPI Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
BP GO:0009920 cell plate formation involved in plant-type cell wall biogenesis IDA Interproscan
CC GO:0019898 extrinsic component of membrane IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004071 aspartate-ammonia ligase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009303 rRNA transcription IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098781 ncRNA transcription IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 395 411
IPR001878 Znf_CCHC 574 591
IPR001878 Znf_CCHC 479 495
IPR000504 RRM_dom 163 230
IPR000504 RRM_dom 264 332
No external refs found!