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AT3G49070


Description : Protein of unknown function (DUF677)


Gene families : OG0003701 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003701_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G49070
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013475001 No alias UPF0496 protein At3g19330 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_00671 No alias UPF0496 protein At3g49070 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_12696 No alias UPF0496 protein At3g19330 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ppi_g59018 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g10360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013297_P001 Zm00001e013297 Putative UPF0496 protein 2 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
BP GO:0009834 plant-type secondary cell wall biogenesis IEP HCCA
BP GO:0010089 xylem development IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0031176 endo-1,4-beta-xylanase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
MF GO:0046910 pectinesterase inhibitor activity IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097599 xylanase activity IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007749 DUF677 221 396
No external refs found!