AT3G48160 (DEL1, E2FE, E2L3)

Aliases : DEL1, E2FE, E2L3

Description : DP-E2F-like 1

Gene families : OG0004589 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004589_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G48160
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
Ala_g28562	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g46504	DEL1, E2FE, E2L3	cell cycle interphase transcription factor *(DEL) &...	0.04	OrthoFinder output from all 47 species
Als_g49953	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14228	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene47792.t2	DEL1, E2FE,...	E2F-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Azfi_s0002.g001154	DEL1, E2FE, E2L3	E2F-type transcription factor & original description:...	0.09	OrthoFinder output from all 47 species
Ceric.22G042300.1	DEL1, E2FE,...	E2F-type transcription factor & original description:...	0.09	OrthoFinder output from all 47 species
Dcu_g06912	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.11	OrthoFinder output from all 47 species
Gb_38482	DEL1, E2FE, E2L3	DEL cell cycle interphase transcription factor....	0.12	OrthoFinder output from all 47 species
LOC_Os02g50630.1	DEL1, E2FE,...	DEL cell cycle interphase transcription factor....	0.06	OrthoFinder output from all 47 species
LOC_Os06g13670.1	DEL1, E2FE,...	DEL cell cycle interphase transcription factor....	0.03	OrthoFinder output from all 47 species
Len_g58085	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Mp3g20990.1	DEL1, E2FE, E2L3	DEL cell cycle interphase transcription factor....	0.12	OrthoFinder output from all 47 species
Msp_g15665	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g03052	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015720	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: CDS=1-1722	0.05	OrthoFinder output from all 47 species
Smo421405	DEL1, E2FE, E2L3	RNA biosynthesis.transcriptional activation.E2F/DP...	0.03	OrthoFinder output from all 47 species
Solyc02g087310.3.1	E2FF, DEL3,...	DEL cell cycle interphase transcription factor....	0.08	OrthoFinder output from all 47 species
Solyc03g113760.3.1	DEL1, E2FE,...	DEL cell cycle interphase transcription factor....	0.09	OrthoFinder output from all 47 species
Spa_g47096	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Tin_g44467	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Zm00001e015774_P001	DEL1, E2FE,...	DEL cell cycle interphase transcription factor....	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	None	Extended
BP	GO:0006275	regulation of DNA replication	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008156	negative regulation of DNA replication	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010948	negative regulation of cell cycle process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0032875	regulation of DNA endoreduplication	None	Extended
BP	GO:0032876	negative regulation of DNA endoreduplication	IGI	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042023	DNA endoreduplication	IMP	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0045786	negative regulation of cell cycle	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051053	negative regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090329	regulation of DNA-templated DNA replication	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000104	negative regulation of DNA-templated DNA replication	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000012	single strand break repair	IEP	HCCA
BP	GO:0000280	nuclear division	IEP	HCCA
BP	GO:0000281	mitotic cytokinesis	IEP	HCCA
MF	GO:0000287	magnesium ion binding	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
CC	GO:0000808	origin recognition complex	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
BP	GO:0001708	cell fate specification	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004170	dUTP diphosphatase activity	IEP	HCCA
BP	GO:0006266	DNA ligation	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006279	premeiotic DNA replication	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007140	male meiotic nuclear division	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009566	fertilization	IEP	HCCA
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0009957	epidermal cell fate specification	IEP	HCCA
BP	GO:0010069	zygote asymmetric cytokinesis in embryo sac	IEP	HCCA
BP	GO:0010070	zygote asymmetric cell division	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010216	maintenance of DNA methylation	IEP	HCCA
BP	GO:0010332	response to gamma radiation	IEP	HCCA
MF	GO:0010385	double-stranded methylated DNA binding	IEP	HCCA
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	HCCA
BP	GO:0010424	DNA methylation on cytosine within a CG sequence	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016444	somatic cell DNA recombination	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0032776	DNA methylation on cytosine	IEP	HCCA
BP	GO:0033260	nuclear DNA replication	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
MF	GO:0047429	nucleoside triphosphate diphosphatase activity	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0061640	cytoskeleton-dependent cytokinesis	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0140013	meiotic nuclear division	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1901987	regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003316	E2F_WHTH_DNA-bd_dom	35	99
IPR003316	E2F_WHTH_DNA-bd_dom	171	250

External Links

No external refs found!

AT3G48160 (DEL1, E2FE, E2L3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation