AT3G46640 (LUX, PCL1)

Aliases : LUX, PCL1

Description : Homeodomain-like superfamily protein

Gene families : OG0000124 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000124_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G46640
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
Adi_g114954	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene28822.t1	RR2, ARR2,...	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g58582	RR2, ARR2	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g26693	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01024916001	LUX, PCL1	Multi-process regulation.circadian clock.evening element...	0.17	OrthoFinder output from all 47 species
Gb_15501	ARR1, RR1	B-type cytokinin ARR response activator. transcription...	0.04	OrthoFinder output from all 47 species
MA_8982282g0010	RR2, ARR2	B-type cytokinin ARR response activator. transcription...	0.02	OrthoFinder output from all 47 species
Msp_g24147	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g19772	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo444702	ARR1, RR1	RNA biosynthesis.transcriptional activation.ARR-B...	0.04	OrthoFinder output from all 47 species
Solyc06g005680.4.1	LUX, PCL1, Solyc06g005680	component LUX of circadian clock Evening complex (EC)	0.14	OrthoFinder output from all 47 species
Solyc06g076350.3.1	Solyc06g076350	component LUX of circadian clock Evening complex (EC)	0.17	OrthoFinder output from all 47 species
Solyc10g078310.2.1	Solyc10g078310	Transcription factor MYBC1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Spa_g02524	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e018507_P001	LUX, PCL1, Zm00001e018507	component LUX of circadian clock Evening complex (EC)	0.11	OrthoFinder output from all 47 species
Zm00001e028258_P001	Zm00001e028258	Transcription factor PCL1 OS=Oryza sativa subsp....	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0007623	circadian rhythm	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000380	alternative mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	148	196

External Links

No external refs found!

AT3G46640 (LUX, PCL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation