AT3G27960

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000703_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G27960

Target	Alias	Description	ECC score	Gene Family Method
Als_g07149	No alias	regulatory protein *(CMU) of microtubule-dependent CSC...	0.03	OrthoFinder output from all 47 species
Aop_g14298	No alias	regulatory protein *(CMU) of microtubule-dependent CSC...	0.03	OrthoFinder output from all 47 species
Azfi_s0051.g031359	No alias	regulatory protein *(CMU) of microtubule-dependent CSC...	0.05	OrthoFinder output from all 47 species
Cba_g62221	No alias	regulatory protein *(CMU) of microtubule-dependent CSC...	0.04	OrthoFinder output from all 47 species
GSVIVT01032474001	No alias	Protein KINESIN LIGHT CHAIN-RELATED 2 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Gb_24147	No alias	regulatory protein (CMU) of microtubule-dependent CSC insertion	0.03	OrthoFinder output from all 47 species
LOC_Os02g01960.1	LOC_Os02g01960	regulatory protein (CMU) of microtubule-dependent CSC insertion	0.04	OrthoFinder output from all 47 species
LOC_Os02g47880.1	LOC_Os02g47880	regulatory protein (CMU) of microtubule-dependent CSC insertion	0.03	OrthoFinder output from all 47 species
MA_50635g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_760658g0010	No alias	regulatory protein (CMU) of microtubule-dependent CSC insertion	0.04	OrthoFinder output from all 47 species
Nbi_g01231	No alias	regulatory protein *(CMU) of microtubule-dependent CSC...	0.02	OrthoFinder output from all 47 species
Nbi_g01430	No alias	regulatory protein *(CMU) of microtubule-dependent CSC...	0.03	OrthoFinder output from all 47 species
Pir_g13620	No alias	regulatory protein *(CMU) of microtubule-dependent CSC...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015505	No alias	regulatory protein *(CMU) of microtubule-dependent CSC...	0.02	OrthoFinder output from all 47 species
Solyc03g114320.4.1	Solyc03g114320	Protein KINESIN LIGHT CHAIN-RELATED 3 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e013426_P003	Zm00001e013426	regulatory protein (CMU) of microtubule-dependent CSC insertion	0.04	OrthoFinder output from all 47 species
Zm00001e023340_P002	Zm00001e023340	regulatory protein (CMU) of microtubule-dependent CSC insertion	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009860	pollen tube growth	IEP	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031347	regulation of defense response	IMP	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015385	sodium:proton antiporter activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0051139	metal cation:proton antiporter activity	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0140828	metal cation:monoatomic cation antiporter activity	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G27960

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation