AT3G18130 (RACK1C_AT)

Aliases : RACK1C_AT

Description : receptor for activated C kinase 1C

Gene families : OG0002231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002231_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G18130

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00058690	RACK1B_AT,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	OrthoFinder output from all 47 species
Adi_g076309	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Adi_g098685	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g115754	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g12720	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Als_g08943	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g32831	RACK1B_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Als_g59033	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Aop_g00477	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Aop_g06871	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Azfi_s0113.g045894	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Azfi_s0230.g059177	RACK1B_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g15083	RACK1B_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g27545	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g27546	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.02G088700.1	RACK1C_AT,...	component *(RACK1) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Ceric.34G016800.1	RACK1C_AT,...	component *(RACK1) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000169.6	RACK1C_AT	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	OrthoFinder output from all 47 species
Cre06.g278222	RACK1C_AT	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	OrthoFinder output from all 47 species
Dac_g14184	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01008395001	MYB4R1, AtMYB4R1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	OrthoFinder output from all 47 species
Gb_33900	RACK1B_AT	associated component RACK1 of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os01g49290.1	RACK1C_AT, LOC_Os01g49290	associated component RACK1 of SSU proteome	0.19	OrthoFinder output from all 47 species
LOC_Os05g47890.1	RACK1C_AT, LOC_Os05g47890	associated component RACK1 of SSU proteome	0.09	OrthoFinder output from all 47 species
Lfl_g05286	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_10435947g0010	RACK1B_AT	Guanine nucleotide-binding protein subunit beta-like...	0.15	OrthoFinder output from all 47 species
Mp3g15630.1	RACK1C_AT	associated component RACK1 of SSU proteome	0.25	OrthoFinder output from all 47 species
Msp_g08733	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Nbi_g06103	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g06109	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Pir_g12442	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g46221	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g25423	RACK1B_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g33109	RID3	component *(RACK1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g19034	No alias	component *(RACK1) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g19035	No alias	component *(RACK1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Smo266532	RACK1C_AT	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	OrthoFinder output from all 47 species
Solyc03g119040.3.1	RACK1B_AT, Solyc03g119040	associated component RACK1 of SSU proteome	0.18	OrthoFinder output from all 47 species
Solyc06g069010.3.1	RACK1B_AT, Solyc06g069010	associated component RACK1 of SSU proteome	0.22	OrthoFinder output from all 47 species
Spa_g01709	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Spa_g16013	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Spa_g25398	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Spa_g25399	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Tin_g04974	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Tin_g45000	RACK1C_AT	component *(RACK1) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Zm00001e026456_P001	RACK1C_AT, Zm00001e026456	associated component RACK1 of SSU proteome	0.22	OrthoFinder output from all 47 species
Zm00001e032340_P001	RACK1C_AT, Zm00001e032340	associated component RACK1 of SSU proteome	0.2	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISS	Interproscan
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005834	heterotrimeric G-protein complex	ISS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	None	Extended
BP	GO:0009845	seed germination	IGI	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032870	cellular response to hormone stimulus	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048364	root development	IGI	Interproscan
BP	GO:0048367	shoot system development	IGI	Interproscan
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	Interproscan
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071396	cellular response to lipid	None	Extended
BP	GO:0071495	cellular response to endogenous stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0097306	cellular response to alcohol	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905360	GTPase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004152	dihydroorotate dehydrogenase activity	IEP	HCCA
MF	GO:0004641	phosphoribosylformylglycinamidine cyclo-ligase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005763	mitochondrial small ribosomal subunit	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016882	cyclo-ligase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	226	261
IPR001680	WD40_repeat	10	44
IPR001680	WD40_repeat	187	221
IPR001680	WD40_repeat	138	179
IPR001680	WD40_repeat	288	321
IPR001680	WD40_repeat	96	133
IPR001680	WD40_repeat	56	91

External Links

No external refs found!

AT3G18130 (RACK1C_AT)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation