AT3G16950 (LPD1, ptlpd1)

Aliases : LPD1, ptlpd1

Description : lipoamide dehydrogenase 1

Gene families : OG0003412 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003412_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G16950
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00032960	evm_27.TU.AmTr_v1...	Lipid metabolism.fatty acid synthesis.acetyl-CoA...	0.14	OrthoFinder output from all 47 species
Als_g37511	LPD1, ptlpd1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0012.g012869	LPD1, ptlpd1	dihydrolipoamide dehydrogenase component of plastidial...	0.04	OrthoFinder output from all 47 species
Ceric.32G036400.1	Ceric.32G036400	not classified & original description: pacid=50598420...	0.08	OrthoFinder output from all 47 species
Ceric.32G036500.1	LPD1, ptlpd1,...	not classified & original description: pacid=50598665...	0.21	OrthoFinder output from all 47 species
Cre01.g016514	No alias	Lipid metabolism.fatty acid synthesis.acetyl-CoA...	0.07	OrthoFinder output from all 47 species
Dac_g11484	No alias	dihydrolipoamide dehydrogenase component of plastidial...	0.05	OrthoFinder output from all 47 species
Dcu_g01402	No alias	dihydrolipoamide dehydrogenase component of plastidial...	0.05	OrthoFinder output from all 47 species
Dde_g26291	LPD1, ptlpd1	dihydrolipoamide dehydrogenase component of plastidial...	0.05	OrthoFinder output from all 47 species
GSVIVT01035022001	No alias	Lipid metabolism.fatty acid synthesis.acetyl-CoA...	0.05	OrthoFinder output from all 47 species
Gb_37746	No alias	dihydrolipoamide dehydrogenase component E3 of...	0.11	OrthoFinder output from all 47 species
LOC_Os01g23610.1	LPD1, ptlpd1,...	dihydrolipoamide dehydrogenase component E3 of...	0.2	OrthoFinder output from all 47 species
LOC_Os05g06460.1	LPD1, ptlpd1,...	dihydrolipoamide dehydrogenase component E3 of...	0.2	OrthoFinder output from all 47 species
Mp5g08370.1	No alias	dihydrolipoamide dehydrogenase component E3 of...	0.09	OrthoFinder output from all 47 species
Msp_g08348	No alias	dihydrolipoamide dehydrogenase component of plastidial...	0.04	OrthoFinder output from all 47 species
Ore_g43899	No alias	dihydrolipoamide dehydrogenase component of plastidial...	0.08	OrthoFinder output from all 47 species
Ppi_g30824	LPD1, ptlpd1	dihydrolipoamide dehydrogenase component of plastidial...	0.06	OrthoFinder output from all 47 species
Smo116004	No alias	Lipid metabolism.fatty acid synthesis.acetyl-CoA...	0.03	OrthoFinder output from all 47 species
Solyc01g100360.4.1	Solyc01g100360	dihydrolipoamide dehydrogenase component E3 of...	0.13	OrthoFinder output from all 47 species
Spa_g12508	LPD1, ptlpd1	dihydrolipoamide dehydrogenase component of plastidial...	0.04	OrthoFinder output from all 47 species
Spa_g54453	LPD1, ptlpd1	dihydrolipoamide dehydrogenase component of plastidial...	0.04	OrthoFinder output from all 47 species
Zm00001e026265_P002	LPD1, ptlpd1,...	dihydrolipoamide dehydrogenase component E3 of...	0.15	OrthoFinder output from all 47 species
Zm00001e026698_P002	LPD1, ptlpd1,...	dihydrolipoamide dehydrogenase component E3 of...	0.21	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004148	dihydrolipoyl dehydrogenase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006084	acetyl-CoA metabolic process	None	Extended
BP	GO:0006085	acetyl-CoA biosynthetic process	RCA	Interproscan
BP	GO:0006086	acetyl-CoA biosynthetic process from pyruvate	TAS	Interproscan
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006164	purine nucleotide biosynthetic process	None	Extended
BP	GO:0006637	acyl-CoA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009152	purine ribonucleotide biosynthetic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	None	Extended
MF	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0035383	thioester metabolic process	None	Extended
BP	GO:0035384	thioester biosynthetic process	None	Extended
BP	GO:0042743	hydrogen peroxide metabolic process	None	Extended
BP	GO:0042744	hydrogen peroxide catabolic process	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071616	acyl-CoA biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000036	acyl carrier activity	IEP	HCCA
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	HCCA
MF	GO:0004075	biotin carboxylase activity	IEP	HCCA
MF	GO:0004076	biotin synthase activity	IEP	HCCA
MF	GO:0004312	fatty acid synthase activity	IEP	HCCA
MF	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity	IEP	HCCA
MF	GO:0004316	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity	IEP	HCCA
MF	GO:0004318	enoyl-[acyl-carrier-protein] reductase (NADH) activity	IEP	HCCA
MF	GO:0004738	pyruvate dehydrogenase activity	IEP	HCCA
MF	GO:0004739	pyruvate dehydrogenase (acetyl-transferring) activity	IEP	HCCA
MF	GO:0004742	dihydrolipoyllysine-residue acetyltransferase activity	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005835	fatty acid synthase complex	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006546	glycine catabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0006733	obsolete oxidoreduction coenzyme metabolic process	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006768	biotin metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
MF	GO:0008710	8-amino-7-oxononanoate synthase activity	IEP	HCCA
BP	GO:0009071	serine family amino acid catabolic process	IEP	HCCA
BP	GO:0009102	biotin biosynthetic process	IEP	HCCA
BP	GO:0009106	lipoate metabolic process	IEP	HCCA
BP	GO:0009107	lipoate biosynthetic process	IEP	HCCA
BP	GO:0009108	obsolete coenzyme biosynthetic process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009310	amine catabolic process	IEP	HCCA
CC	GO:0009317	acetyl-CoA carboxylase complex	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
CC	GO:0009534	chloroplast thylakoid	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009804	coumarin metabolic process	IEP	HCCA
BP	GO:0009805	coumarin biosynthetic process	IEP	HCCA
BP	GO:0010020	chloroplast fission	IEP	HCCA
CC	GO:0010240	plastid pyruvate dehydrogenase complex	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0016125	sterol metabolic process	IEP	HCCA
BP	GO:0016126	sterol biosynthetic process	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016417	S-acyltransferase activity	IEP	HCCA
MF	GO:0016418	S-acetyltransferase activity	IEP	HCCA
MF	GO:0016421	CoA carboxylase activity	IEP	HCCA
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016631	enoyl-[acyl-carrier-protein] reductase activity	IEP	HCCA
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0016783	sulfurtransferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0016992	lipoate synthase activity	IEP	HCCA
MF	GO:0019171	3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
MF	GO:0030955	potassium ion binding	IEP	HCCA
MF	GO:0031420	alkali metal ion binding	IEP	HCCA
CC	GO:0031976	plastid thylakoid	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0042180	cellular ketone metabolic process	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0042335	cuticle development	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	HCCA
BP	GO:0042445	hormone metabolic process	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043572	plastid fission	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	HCCA
CC	GO:0045254	pyruvate dehydrogenase complex	IEP	HCCA
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
MF	GO:0051192	prosthetic group binding	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023753	FAD/NAD-binding_dom	87	418
IPR004099	Pyr_nucl-diS_OxRdtase_dimer	437	548

External Links

No external refs found!

AT3G16950 (LPD1, ptlpd1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation