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  5. AT3G16260

AT3G16260 (TRZ4)


Aliases : TRZ4

Description : tRNAse Z4


Gene families : OG0002827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002827_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G16260

Target Alias Description ECC score Gene Family Method Actions
AT1G52160 TRZ3 tRNAse Z3 0.04 OrthoFinder output from all 47 species
Adi_g014251 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ala_g18276 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Cba_g27395 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01017040001 TRZ4 RNA processing.ribonuclease activities.RNase Z endoribonuclease 0.03 OrthoFinder output from all 47 species
Nbi_g04470 TRZ3 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Sam_g11586 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Sam_g29039 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Tin_g12840 TRZ4 EC_3.1 hydrolase acTing on ester bond & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008152 metabolic process ISS Interproscan
BP GO:0042780 tRNA 3'-end processing IDA Interproscan
MF GO:0042781 3'-tRNA processing endoribonuclease activity IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003941 L-serine ammonia-lyase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008721 D-serine ammonia-lyase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009662 etioplast organization IEP HCCA
BP GO:0010021 amylopectin biosynthetic process IEP HCCA
CC GO:0010368 chloroplast isoamylase complex IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016109 tetraterpenoid biosynthetic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016117 carotenoid biosynthetic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016841 ammonia-lyase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0019156 isoamylase activity IEP HCCA
MF GO:0030378 serine racemase activity IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
CC GO:0043033 isoamylase complex IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0046416 D-amino acid metabolic process IEP HCCA
MF GO:0046608 carotenoid isomerase activity IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0070178 D-serine metabolic process IEP HCCA
BP GO:2000896 amylopectin metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR027794 tRNase_Z_dom 137 193
No external refs found!