AT3G15460

Description : Ribosomal RNA processing Brix domain protein

Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G15460
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00215770	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Adi_g045878	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.02	OrthoFinder output from all 47 species
Aop_g02466	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.04	OrthoFinder output from all 47 species
Ceric.16G037900.1	Ceric.16G037900	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001206.16	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Cre02.g095400	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01028448001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Gb_30311	No alias	BRX1 assembly factor involved in ITS1 rRNA removal	0.04	OrthoFinder output from all 47 species
LOC_Os02g37870.1	LOC_Os02g37870	BRX1 assembly factor involved in ITS1 rRNA removal	0.05	OrthoFinder output from all 47 species
Len_g16692	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.02	OrthoFinder output from all 47 species
MA_14692g0010	No alias	BRX1 assembly factor involved in ITS1 rRNA removal	0.07	OrthoFinder output from all 47 species
Mp4g04670.1	No alias	BRX1 assembly factor involved in ITS1 rRNA removal	0.08	OrthoFinder output from all 47 species
Pp3c16_10600V3.1	Pp3c16_10600	Ribosomal RNA processing Brix domain protein	0.02	OrthoFinder output from all 47 species
Sam_g52557	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.05	OrthoFinder output from all 47 species
Smo66840	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Solyc04g016380.3.1	Solyc04g016380	BRX1 assembly factor involved in ITS1 rRNA removal	0.15	OrthoFinder output from all 47 species
Zm00001e022842_P003	Zm00001e022842	BRX1 assembly factor involved in ITS1 rRNA removal	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEP	HCCA
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	IEP	HCCA
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	HCCA
MF	GO:0003963	RNA-3'-phosphate cyclase activity	IEP	HCCA
MF	GO:0004152	dihydroorotate dehydrogenase activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
MF	GO:0009975	cyclase activity	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0010030	positive regulation of seed germination	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
MF	GO:0016289	CoA hydrolase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018195	peptidyl-arginine modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018216	peptidyl-arginine methylation	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0034969	histone arginine methylation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043985	histone H4-R3 methylation	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090351	seedling development	IEP	HCCA
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007109	Brix	60	249

External Links

No external refs found!

AT3G15460

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation