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  5. AT3G11910

AT3G11910 (UBP13)


Aliases : UBP13

Description : ubiquitin-specific protease 13


Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G11910

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00140970 UBP13,... Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Adi_g022452 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g060998 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g076953 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g109500 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g21287 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16236 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.11 OrthoFinder output from all 47 species
Als_g05134 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g11910 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g29323 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g32969 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g04496 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g20270 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g12303 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13913.t1 UBP12, Aspi01Gene13913 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19498.t1 UBP13, Aspi01Gene19498 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16252 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17070 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G077200.1 UBP13, Ceric.04G077200 deubiquitinase *(UBP12-13) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.13G025300.1 UBP13, Ceric.13G025300 deubiquitinase *(UBP12-13) & original description:... 0.11 OrthoFinder output from all 47 species
Ceric.14G040100.1 UBP12, Ceric.14G040100 deubiquitinase *(UBP12-13) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.24G037500.1 UBP12, Ceric.24G037500 deubiquitinase *(UBP12-13) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.46 UBP12 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g06495 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g46962 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08217 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18754 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022498001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
GSVIVT01034603001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.07 OrthoFinder output from all 47 species
GSVIVT01037528001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
Gb_34568 UBP13 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 OrthoFinder output from all 47 species
LOC_Os01g56490.1 UBP13, LOC_Os01g56490 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.07 OrthoFinder output from all 47 species
LOC_Os07g06950.1 UBP12, LOC_Os07g06950 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.09 OrthoFinder output from all 47 species
LOC_Os11g36470.1 UBP13, LOC_Os11g36470 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.06 OrthoFinder output from all 47 species
LOC_Os12g30540.1 UBP12, LOC_Os12g30540 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
Len_g10766 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23299 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g05026 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426331g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
MA_10427483g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 OrthoFinder output from all 47 species
MA_10427483g0020 UBP13 deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
MA_10428769g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
MA_32639g0010 UBP12 ubiquitin protease (USP7) 0.05 OrthoFinder output from all 47 species
MA_75085g0010 UBP13 deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Mp3g15430.1 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
Msp_g15171 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40484 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01064 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16380 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16929 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18625 No alias deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Smo444302 UBP12 Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
Solyc10g081610.2.1 UBP12, Solyc10g081610 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
Solyc11g006320.2.1 UBP12, Solyc11g006320 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.07 OrthoFinder output from all 47 species
Solyc11g071700.2.1 UBP12, Solyc11g071700 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Zm00001e019687_P003 UBP13, Zm00001e019687 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.07 OrthoFinder output from all 47 species
Zm00001e024432_P001 UBP12, Zm00001e024432 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Zm00001e032871_P004 UBP12, Zm00001e032871 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.09 OrthoFinder output from all 47 species
Zm00001e039540_P003 UBP12, Zm00001e039540 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
BP GO:0009630 gravitropism RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
CC GO:0000932 P-body IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0001676 long-chain fatty acid metabolic process IEP HCCA
BP GO:0001763 morphogenesis of a branching structure IEP HCCA
BP GO:0002213 defense response to insect IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006611 protein export from nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010165 response to X-ray IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010223 secondary shoot formation IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010346 shoot axis formation IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010452 histone H3-K36 methylation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
MF GO:0031490 chromatin DNA binding IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033233 regulation of protein sumoylation IEP HCCA
BP GO:0033234 negative regulation of protein sumoylation IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042800 histone H3K4 methyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048437 floral organ development IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048645 animal organ formation IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140938 histone H3 methyltransferase activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903320 regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR024729 USP7_ICP0-binding_dom 623 874
IPR002083 MATH/TRAF_dom 62 180
IPR001394 Peptidase_C19_UCH 198 519
IPR029346 USP_C 884 1093
No external refs found!