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  5. AT3G07850

AT3G07850


Description : Pectin lyase-like superfamily protein


Gene families : OG0003404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G07850
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270640 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.06 OrthoFinder output from all 47 species
AT3G07820 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G07840 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
GSVIVT01028044001 PGA4 Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01030017001 No alias Polygalacturonase OS=Gossypium hirsutum 0.03 OrthoFinder output from all 47 species
GSVIVT01030019001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.03 OrthoFinder output from all 47 species
GSVIVT01035103001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia 0.04 OrthoFinder output from all 47 species
LOC_Os01g33300.1 LOC_Os01g33300 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 OrthoFinder output from all 47 species
LOC_Os02g10300.1 LOC_Os02g10300 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.06 OrthoFinder output from all 47 species
LOC_Os06g35320.1 LOC_Os06g35320 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 OrthoFinder output from all 47 species
Solyc01g066070.3.1 Solyc01g066070 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.04 OrthoFinder output from all 47 species
Solyc06g009200.3.1 PGA4, Solyc06g009200 Polygalacturonase OS=Nicotiana tabacum... 0.04 OrthoFinder output from all 47 species
Solyc07g044870.4.1 Solyc07g044870 Polygalacturonase OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species
Zm00001e022246_P002 Zm00001e022246 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.02 OrthoFinder output from all 47 species
Zm00001e025021_P003 Zm00001e025021 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 OrthoFinder output from all 47 species
Zm00001e026354_P001 Zm00001e026354 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 OrthoFinder output from all 47 species
Zm00001e030524_P001 Zm00001e030524 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.05 OrthoFinder output from all 47 species
Zm00001e030528_P001 Zm00001e030528 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030529_P001 Zm00001e030529 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.08 OrthoFinder output from all 47 species
Zm00001e030530_P001 Zm00001e030530 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.09 OrthoFinder output from all 47 species
Zm00001e030532_P001 Zm00001e030532 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize : 345.0) 0.02 OrthoFinder output from all 47 species
Zm00001e030533_P001 Zm00001e030533 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030534_P001 Zm00001e030534 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030535_P001 Zm00001e030535 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030537_P001 Zm00001e030537 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e042494_P001 Zm00001e042494 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0001558 regulation of cell growth IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0010191 mucilage metabolic process IEP HCCA
BP GO:0010192 mucilage biosynthetic process IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010214 seed coat development IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022603 regulation of anatomical structure morphogenesis IEP HCCA
BP GO:0022604 regulation of cell morphogenesis IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048354 mucilage biosynthetic process involved in seed coat development IEP HCCA
BP GO:0048359 mucilage metabolic process involved in seed coat development IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051510 regulation of unidimensional cell growth IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0080092 regulation of pollen tube growth IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 101 424
No external refs found!