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AT3G07820


Description : Pectin lyase-like superfamily protein


Gene families : OG0003404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G07820
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270640 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.17 OrthoFinder output from all 47 species
AMTR_s00019p00055210 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.04 OrthoFinder output from all 47 species
AMTR_s00019p00057300 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 OrthoFinder output from all 47 species
AMTR_s00019p00130680 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.05 OrthoFinder output from all 47 species
AT3G07850 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G14040 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
GSVIVT01028044001 PGA4 Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana 0.16 OrthoFinder output from all 47 species
GSVIVT01030017001 No alias Polygalacturonase OS=Gossypium hirsutum 0.12 OrthoFinder output from all 47 species
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.12 OrthoFinder output from all 47 species
GSVIVT01030030001 No alias Polygalacturonase OS=Gossypium hirsutum 0.07 OrthoFinder output from all 47 species
GSVIVT01035103001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia 0.17 OrthoFinder output from all 47 species
LOC_Os01g33300.1 LOC_Os01g33300 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.14 OrthoFinder output from all 47 species
LOC_Os02g10300.1 LOC_Os02g10300 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.09 OrthoFinder output from all 47 species
LOC_Os06g35320.1 LOC_Os06g35320 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.07 OrthoFinder output from all 47 species
LOC_Os06g40890.1 LOC_Os06g40890 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.15 OrthoFinder output from all 47 species
Solyc01g066070.3.1 Solyc01g066070 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.17 OrthoFinder output from all 47 species
Solyc06g009200.3.1 PGA4, Solyc06g009200 Polygalacturonase OS=Nicotiana tabacum... 0.13 OrthoFinder output from all 47 species
Solyc12g006293.1.1 Solyc12g006293 Polygalacturonase OS=Nicotiana tabacum... 0.04 OrthoFinder output from all 47 species
Solyc12g006313.1.1 Solyc12g006313 Polygalacturonase OS=Nicotiana tabacum... 0.04 OrthoFinder output from all 47 species
Zm00001e002846_P002 Zm00001e002846 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.04 OrthoFinder output from all 47 species
Zm00001e014066_P002 Zm00001e014066 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.05 OrthoFinder output from all 47 species
Zm00001e017747_P001 Zm00001e017747 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.06 OrthoFinder output from all 47 species
Zm00001e022246_P002 Zm00001e022246 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 OrthoFinder output from all 47 species
Zm00001e025021_P003 Zm00001e025021 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.1 OrthoFinder output from all 47 species
Zm00001e026354_P001 Zm00001e026354 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.07 OrthoFinder output from all 47 species
Zm00001e030524_P001 Zm00001e030524 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 OrthoFinder output from all 47 species
Zm00001e030525_P001 Zm00001e030525 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030528_P001 Zm00001e030528 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.04 OrthoFinder output from all 47 species
Zm00001e030529_P001 Zm00001e030529 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.07 OrthoFinder output from all 47 species
Zm00001e030530_P001 Zm00001e030530 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.1 OrthoFinder output from all 47 species
Zm00001e030533_P001 Zm00001e030533 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030541_P001 Zm00001e030541 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.02 OrthoFinder output from all 47 species
Zm00001e042494_P001 Zm00001e042494 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0001558 regulation of cell growth IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005388 P-type calcium transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0006882 cellular zinc ion homeostasis IEP HCCA
BP GO:0007338 single fertilization IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009624 response to nematode IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015085 calcium ion transmembrane transporter activity IEP HCCA
MF GO:0015662 P-type ion transporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0022603 regulation of anatomical structure morphogenesis IEP HCCA
BP GO:0022604 regulation of cell morphogenesis IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046910 pectinesterase inhibitor activity IEP HCCA
BP GO:0046916 cellular transition metal ion homeostasis IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0048868 pollen tube development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051510 regulation of unidimensional cell growth IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055069 zinc ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
MF GO:0140358 P-type transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 47 374
No external refs found!