AT3G07430 (emb1990, ATYLMG1-1, YLMG1-1)

Aliases : emb1990, ATYLMG1-1, YLMG1-1

Description : YGGT family protein

Gene families : OG0002185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002185_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G07430
Cluster	HCCA: Cluster_38

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00200150	YLMG1-2,...	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00024p00238310	YLMG2, ATYLMG2,...	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Adi_g046778	YLMG2, ATYLMG2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g04100	YLMG2, ATYLMG2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene22905.t1	YLMG2, ATYLMG2,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0018.g014976	No alias	not classified & original description: CDS=84-614	0.03	OrthoFinder output from all 47 species
Cre02.g080250	YLMG1-2, ATYLMG1-2	No description available	0.06	OrthoFinder output from all 47 species
Cre16.g684300	YLMG2, ATYLMG2	No description available	0.02	OrthoFinder output from all 47 species
Dde_g10748	YLMG2, ATYLMG2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01035473001	YLMG2, ATYLMG2	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Gb_33767	YLMG2, ATYLMG2	YlmG homolog protein 2, chloroplastic OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os03g08080.1	YLMG2, ATYLMG2,...	YlmG homolog protein 2, chloroplastic OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_961483g0010	emb1990,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp3g13060.1	YLMG2, ATYLMG2	YlmG homolog protein 2, chloroplastic OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Mp8g11810.1	YLMG1-2, ATYLMG1-2	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g11789	YLMG1-2, ATYLMG1-2	plastid-nucleoid partitioning factor *(YLMG1) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g12666	YLMG1-2, ATYLMG1-2	plastid-nucleoid partitioning factor *(YLMG1) & original...	0.03	OrthoFinder output from all 47 species
Pp3c10_6170V3.1	YLMG1-2,...	YGGT family protein	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014630	YLMG1-2, ATYLMG1-2	plastid-nucleoid partitioning factor *(YLMG1) & original...	0.04	OrthoFinder output from all 47 species
Solyc06g083110.2.1	YLMG1-2,...	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Zm00001e000570_P001	YLMG2, ATYLMG2,...	YlmG homolog protein 2, chloroplastic OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e038876_P002	Zm00001e038876	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009536	plastid	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010020	chloroplast fission	IMP	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0042651	thylakoid membrane	IDA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043572	plastid fission	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048285	organelle fission	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090143	nucleoid organization	IMP	Interproscan
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000906	6,7-dimethyl-8-ribityllumazine synthase activity	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008187	poly-pyrimidine tract binding	IEP	HCCA
MF	GO:0008266	poly(U) RNA binding	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
CC	GO:0009295	nucleoid	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
CC	GO:0009508	plastid chromosome	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0009690	cytokinin metabolic process	IEP	HCCA
BP	GO:0009691	cytokinin biosynthetic process	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0009895	negative regulation of catabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0031329	regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031330	negative regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031425	chloroplast RNA processing	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043487	regulation of RNA stability	IEP	HCCA
BP	GO:0043489	RNA stabilization	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0051341	regulation of oxidoreductase activity	IEP	HCCA
BP	GO:0051353	positive regulation of oxidoreductase activity	IEP	HCCA
MF	GO:0052381	tRNA dimethylallyltransferase activity	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901668	regulation of superoxide dismutase activity	IEP	HCCA
BP	GO:1901671	positive regulation of superoxide dismutase activity	IEP	HCCA
BP	GO:1902369	negative regulation of RNA catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003425	CCB3/YggT	158	226

External Links

No external refs found!

AT3G07430 (emb1990, ATYLMG1-1, YLMG1-1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation