AT3G04940 (ATCYSD1, CYSD1)

Aliases : ATCYSD1, CYSD1

Description : cysteine synthase D1

Gene families : OG0000535 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000535_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G04940
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
AT3G22460	OASA2	O-acetylserine (thiol) lyase (OAS-TL) isoform A2	0.04	OrthoFinder output from all 47 species
Aob_g07073	ACS1, OASB,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Dac_g11650	CYSC1,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Dde_g12413	ACS1, OASB,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Ehy_g16676	CYSD2, ATCYSD2	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
LOC_Os03g53650.1	CYTACS1, OLD3,...	O-acetylserine sulfydrylase	0.02	OrthoFinder output from all 47 species
Len_g29732	ACS1, OASB,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	OrthoFinder output from all 47 species
Len_g37998	ACS1, OASB,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Lfl_g05975	ATCS-C, OASC	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Mp4g01360.1	CYTACS1, OLD3,...	Enzyme classification.EC_2 transferases.EC_2.5...	0.02	OrthoFinder output from all 47 species
Msp_g47985	CYSC1,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Pir_g08230	ATCS-C, OASC	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	OrthoFinder output from all 47 species
Pnu_g13700	DES1	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	OrthoFinder output from all 47 species
Sam_g12073	No alias	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Tin_g03879	CYSC1,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	OrthoFinder output from all 47 species
Tin_g14823	CYTACS1, OLD3,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	RCA	Interproscan
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004124	cysteine synthase activity	IDA	Interproscan
MF	GO:0004124	cysteine synthase activity	IMP	Interproscan
MF	GO:0004124	cysteine synthase activity	ISS	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006534	cysteine metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	RCA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	RCA	Interproscan
BP	GO:0009070	serine family amino acid biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	None	Extended
BP	GO:0019344	cysteine biosynthetic process	IDA	Interproscan
BP	GO:0019344	cysteine biosynthetic process	ISS	Interproscan
BP	GO:0019344	cysteine biosynthetic process	RCA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0042545	cell wall modification	RCA	Interproscan
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000255	allantoin metabolic process	IEP	HCCA
BP	GO:0000256	allantoin catabolic process	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003858	3-hydroxybutyrate dehydrogenase activity	IEP	HCCA
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004564	beta-fructofuranosidase activity	IEP	HCCA
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005985	sucrose metabolic process	IEP	HCCA
BP	GO:0005987	sucrose catabolic process	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006144	purine nucleobase metabolic process	IEP	HCCA
BP	GO:0006145	purine nucleobase catabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006788	heme oxidation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009313	oligosaccharide catabolic process	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0010024	phytochromobilin biosynthetic process	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010135	ureide metabolic process	IEP	HCCA
BP	GO:0010136	ureide catabolic process	IEP	HCCA
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	HCCA
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	HCCA
BP	GO:0015675	nickel cation transport	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043605	amide catabolic process	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	HCCA
BP	GO:0046113	nucleobase catabolic process	IEP	HCCA
BP	GO:0046352	disaccharide catabolic process	IEP	HCCA
BP	GO:0046443	FAD metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0051202	phytochromobilin metabolic process	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
MF	GO:0071522	ureidoglycine aminohydrolase activity	IEP	HCCA
BP	GO:0072387	flavin adenine dinucleotide metabolic process	IEP	HCCA
BP	GO:0072523	purine-containing compound catabolic process	IEP	HCCA
BP	GO:0080092	regulation of pollen tube growth	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001926	TrpB-like_PALP	13	299

External Links

No external refs found!

AT3G04940 (ATCYSD1, CYSD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation