AT3G02060

Description : DEAD/DEAH box helicase, putative

Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G02060
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00242110	evm_27.TU.AmTr_v1...	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.07	OrthoFinder output from all 47 species
Aev_g07951	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g17279	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g28280	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0257.g060601	No alias	not classified & original description: CDS=200-3178	0.03	OrthoFinder output from all 47 species
Cba_g18567	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.13G022800.1	Ceric.13G022800	not classified & original description: pacid=50636376...	0.05	OrthoFinder output from all 47 species
Dcu_g04126	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01032955001	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.06	OrthoFinder output from all 47 species
Gb_38755	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.05	OrthoFinder output from all 47 species
LOC_Os11g32880.1	LOC_Os11g32880	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.08	OrthoFinder output from all 47 species
Lfl_g05693	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Mp2g07230.1	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.02	OrthoFinder output from all 47 species
Msp_g14110	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10930	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g30043	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo77276	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.04	OrthoFinder output from all 47 species
Solyc02g094590.3.1	Solyc02g094590	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.09	OrthoFinder output from all 47 species
Tin_g27619	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e011170_P004	Zm00001e011170	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006779	porphyrin-containing compound biosynthetic process	None	Extended
BP	GO:0006783	heme biosynthetic process	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033014	tetrapyrrole biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042168	heme metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	HCCA
BP	GO:0000373	Group II intron splicing	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004532	exoribonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004654	polyribonucleotide nucleotidyltransferase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006264	mitochondrial DNA replication	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009295	nucleoid	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009508	plastid chromosome	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0009668	plastid membrane organization	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
BP	GO:0010027	thylakoid membrane organization	IEP	HCCA
BP	GO:0010098	suspensor development	IEP	HCCA
BP	GO:0010239	chloroplast mRNA processing	IEP	HCCA
BP	GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0010323	negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
CC	GO:0010494	cytoplasmic stress granule	IEP	HCCA
BP	GO:0010496	intercellular transport	IEP	HCCA
BP	GO:0010497	plasmodesmata-mediated intercellular transport	IEP	HCCA
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0010677	negative regulation of cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016119	carotene metabolic process	IEP	HCCA
BP	GO:0016120	carotene biosynthetic process	IEP	HCCA
BP	GO:0016122	xanthophyll metabolic process	IEP	HCCA
BP	GO:0016123	xanthophyll biosynthetic process	IEP	HCCA
BP	GO:0016556	mRNA modification	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
BP	GO:0019216	regulation of lipid metabolic process	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031425	chloroplast RNA processing	IEP	HCCA
BP	GO:0032042	mitochondrial DNA metabolic process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033258	plastid DNA metabolic process	IEP	HCCA
BP	GO:0033259	plastid DNA replication	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0035770	ribonucleoprotein granule	IEP	HCCA
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	HCCA
BP	GO:0042214	terpene metabolic process	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0045827	negative regulation of isoprenoid metabolic process	IEP	HCCA
BP	GO:0045833	negative regulation of lipid metabolic process	IEP	HCCA
BP	GO:0045912	negative regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0046246	terpene biosynthetic process	IEP	HCCA
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0051055	negative regulation of lipid biosynthetic process	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	HCCA
MF	GO:0070180	large ribosomal subunit rRNA binding	IEP	HCCA
BP	GO:0071071	regulation of phospholipid biosynthetic process	IEP	HCCA
BP	GO:0071072	negative regulation of phospholipid biosynthetic process	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
BP	GO:0080158	obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901259	chloroplast rRNA processing	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903725	regulation of phospholipid metabolic process	IEP	HCCA
BP	GO:1903726	negative regulation of phospholipid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	470	577
IPR011545	DEAD/DEAH_box_helicase_dom	292	430
IPR003711	CarD-like/TRCF_RID	144	242

External Links

No external refs found!

AT3G02060

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation