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  5. AT3G01400

AT3G01400


Description : ARM repeat superfamily protein


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G01400
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Aev_g04770 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02192 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16049 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10750 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007619 PUB13, ATPUB13 not classified & original description: CDS=1-951 0.03 OrthoFinder output from all 47 species
Azfi_s0292.g063403 No alias not classified & original description: CDS=1-2253 0.03 OrthoFinder output from all 47 species
Azfi_s0497.g073607 PUB12, AtPUB12 not classified & original description: CDS=1-549 0.02 OrthoFinder output from all 47 species
Azfi_s2299.g110335 PUB14, ATPUB14 not classified & original description: CDS=293-1597 0.02 OrthoFinder output from all 47 species
Cba_g78060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.34G042900.1 PUB13, ATPUB13,... not classified & original description: pacid=50623547... 0.03 OrthoFinder output from all 47 species
Dcu_g07071 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17103 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_24088 PUB9, ATPUB9 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os02g49950.1 LOC_Os02g49950 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
LOC_Os03g16824.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Lfl_g13185 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14639 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g37725 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02242 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g39748 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07479 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25175 No alias E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Solyc09g056450.4.1 PUB9, ATPUB9,... U-box domain-containing protein 9 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Tin_g39824 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002954_P001 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e014377_P001 ATPUB17, PUB17,... U-box domain-containing protein 4 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
CC GO:0000813 ESCRT I complex IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004520 endodeoxyribonuclease activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
MF GO:0005274 allantoin:proton symporter activity IEP HCCA
MF GO:0005345 purine nucleobase transmembrane transporter activity IEP HCCA
MF GO:0005350 pyrimidine nucleobase transmembrane transporter activity IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005769 early endosome IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006294 nucleotide-excision repair, preincision complex assembly IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010213 non-photoreactive DNA repair IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010411 xyloglucan metabolic process IEP HCCA
BP GO:0010440 stomatal lineage progression IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015205 nucleobase transmembrane transporter activity IEP HCCA
MF GO:0015210 uracil transmembrane transporter activity IEP HCCA
BP GO:0015720 allantoin transport IEP HCCA
BP GO:0015855 pyrimidine nucleobase transport IEP HCCA
BP GO:0015857 uracil transport IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017050 D-erythro-sphingosine kinase activity IEP HCCA
MF GO:0017108 5'-flap endonuclease activity IEP HCCA
BP GO:0030148 sphingolipid biosynthetic process IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0040007 growth IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0042906 xanthine transport IEP HCCA
MF GO:0042907 xanthine transmembrane transporter activity IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0048256 flap endonuclease activity IEP HCCA
MF GO:0050897 cobalt ion binding IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 95 133
IPR000225 Armadillo 178 216
IPR000225 Armadillo 136 174
No external refs found!