1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT2G43650

AT2G43650 (EMB2777)


Aliases : EMB2777

Description : Sas10/U3 ribonucleoprotein (Utp) family protein


Gene families : OG0001866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001866_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G43650

Target Alias Description ECC score Gene Family Method Actions
Aev_g18206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11404 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.03 OrthoFinder output from all 47 species
Aob_g04111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12731 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Aop_g07657 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.03 OrthoFinder output from all 47 species
Azfi_s0621.g079590 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.03 OrthoFinder output from all 47 species
Ceric.01G022400.1 EMB2777, Ceric.01G022400 regulatory protein *(THAL) of rRNA transcription control... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.45 EMB2777 No description available 0.02 OrthoFinder output from all 47 species
Cre09.g394399 EMB2777 No description available 0.1 OrthoFinder output from all 47 species
Dcu_g23543 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13581 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.04 OrthoFinder output from all 47 species
GSVIVT01009200001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01038137001 EMB2777 No description available 0.05 OrthoFinder output from all 47 species
Gb_25856 EMB2777 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os01g01510.1 EMB2777, LOC_Os01g01510 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Len_g47069 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.04 OrthoFinder output from all 47 species
MA_348135g0010 EMB2777 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp4g18120.1 EMB2777 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Pp3c26_12080V3.1 Pp3c26_12080 Sas10/Utp3/C1D family 0.02 OrthoFinder output from all 47 species
Sam_g30344 No alias regulatory protein *(THAL) of rRNA transcription control... 0.03 OrthoFinder output from all 47 species
Smo405212 EMB2777 No description available 0.05 OrthoFinder output from all 47 species
Solyc04g076560.3.1 Solyc04g076560 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Solyc11g072390.2.1 EMB2777, Solyc11g072390 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Tin_g14242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003450_P001 EMB2777, Zm00001e003450 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e028507_P001 Zm00001e028507 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000741 karyogamy IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004821 histidine-tRNA ligase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006427 histidyl-tRNA aminoacylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009303 rRNA transcription IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018023 peptidyl-lysine trimethylation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
MF GO:0031490 chromatin DNA binding IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
CC GO:0035097 histone methyltransferase complex IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045694 regulation of embryo sac egg cell differentiation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048188 Set1C/COMPASS complex IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0060776 simple leaf morphogenesis IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0080182 histone H3-K4 trimethylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0098781 ncRNA transcription IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007146 Sas10/Utp3/C1D 243 323
IPR018972 Sas10_C_dom 582 654
No external refs found!