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  5. AT2G42260

AT2G42260 (UVI4, PYM)


Aliases : UVI4, PYM

Description : uv-b-insensitive 4


Gene families : OG0013890 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013890_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G42260
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01033358001 UVI4, PYM Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.08 OrthoFinder output from all 47 species
LOC_Os02g37850.2 UVI4, PYM, LOC_Os02g37850 OSD1 (APC/C)-dependent ubiquitination regulating protein 0.05 OrthoFinder output from all 47 species
LOC_Os04g39670.1 UVI4, PYM, LOC_Os04g39670 OSD1 (APC/C)-dependent ubiquitination regulating protein 0.09 OrthoFinder output from all 47 species
Solyc10g080400.2.1 UVI4, PYM, Solyc10g080400 OSD1 (APC/C)-dependent ubiquitination regulating protein 0.07 OrthoFinder output from all 47 species
Zm00001e007830_P001 UVI4, PYM, Zm00001e007830 OSD1 (APC/C)-dependent ubiquitination regulating protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0010091 trichome branching IMP Interproscan
BP GO:0010224 response to UV-B IMP Interproscan
BP GO:0042023 DNA endoreduplication IMP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
MF GO:0000400 four-way junction DNA binding IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
MF GO:0032137 guanine/thymine mispair binding IEP HCCA
MF GO:0032138 single base insertion or deletion binding IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
CC GO:0032301 MutSalpha complex IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045910 negative regulation of DNA recombination IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA

No InterPro domains available for this sequence

No external refs found!