AT2G35930 (PUB23)

Aliases : PUB23

Description : plant U-box 23

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G35930
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00199950	evm_27.TU.AmTr_v1...	U-box domain-containing protein 31 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00030p00159240	PUB23,...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00043p00215340	PUB8, B80,...	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00069p00038840	PUB22,...	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00138p00053700	evm_27.TU.AmTr_v1...	U-box domain-containing protein 21 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Adi_g045017	CMPG1, ATCMPG1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04583	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g05258	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g09134	PUB25	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g20026	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g23185	CMPG1, ATCMPG1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g40105	PUB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g60936	PUB25	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g62359	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g01235	PUB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene22942.t1	PUB26, Aspi01Gene22942	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44311.t1	PUB22, Aspi01Gene44311	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene60604.t1	PUB26, Aspi01Gene60604	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.1Z056500.1	PUB26, Ceric.1Z056500	U-Box-group-III E3 ubiquitin ligase & original...	0.05	OrthoFinder output from all 47 species
Ceric.21G081600.1	PUB26, Ceric.21G081600	U-Box-group-III E3 ubiquitin ligase & original...	0.04	OrthoFinder output from all 47 species
Dcu_g01521	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04516	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g26825	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03660	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01026542001	CMPG2, ATCMPG2	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Gb_02628	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_17119	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Gb_29734	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g64570.1	PUB23, LOC_Os01g64570	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os02g50460.1	LOC_Os02g50460	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os03g13740.1	LOC_Os03g13740	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os04g34140.1	PUB29, ATPUB29,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os12g06410.1	PUB24, LOC_Os12g06410	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Lfl_g24284	PUB25	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_10425865g0010	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_10430196g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10432179g0010	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_10432981g0010	PUB22	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_200041g0010	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
MA_58844g0020	PUB22	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_6335g0010	CMPG2, ATCMPG2	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
MA_684442g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_7928010g0010	PUB23	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_9494855g0010	PUB26	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_95662g0020	PUB25	U-box domain-containing protein 27 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp3g22740.1	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Msp_g11599	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g37574	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g21647	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g27378	PUB23	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g007000.4.1	PUB22, Solyc01g007000	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g007010.2.1	PUB22, Solyc01g007010	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g007020.4.1	PUB23, Solyc01g007020	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g007030.3.1	PUB22, Solyc01g007030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g007040.4.1	PUB22, Solyc01g007040	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g007050.3.1	PUB24, Solyc01g007050	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc01g107980.3.1	PUB26, Solyc01g107980	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc04g008100.3.1	Solyc04g008100	U-box domain-containing protein 21 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Solyc04g071030.1.1	Solyc04g071030	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Solyc06g074140.1.1	PUB24, Solyc06g074140	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc11g006030.1.1	Solyc11g006030	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc11g068920.1.1	PUB23, Solyc11g068920	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc11g068940.1.1	PUB24, Solyc11g068940	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Spa_g47017	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g15094	PUB26	E3 ubiquiTin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e002598_P001	Zm00001e002598	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e007109_P001	PUB23, Zm00001e007109	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e008167_P001	PUB23, Zm00001e008167	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e014752_P001	PUB23, Zm00001e014752	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e036030_P001	Zm00001e036030	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e038657_P001	Zm00001e038657	U-box domain-containing protein 75 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0002252	immune effector process	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002679	respiratory burst involved in defense response	IGI	Interproscan
BP	GO:0002679	respiratory burst involved in defense response	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0004842	ubiquitin-protein transferase activity	IGI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IGI	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009414	response to water deprivation	IMP	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0035556	intracellular signal transduction	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042742	defense response to bacterium	RCA	Interproscan
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045730	respiratory burst	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051865	protein autoubiquitination	IDA	Interproscan
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0009403	toxin biosynthetic process	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009408	response to heat	IEP	HCCA
BP	GO:0009595	detection of biotic stimulus	IEP	HCCA
BP	GO:0009696	salicylic acid metabolic process	IEP	HCCA
BP	GO:0009697	salicylic acid biosynthetic process	IEP	HCCA
BP	GO:0009700	indole phytoalexin biosynthetic process	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0009896	positive regulation of catabolic process	IEP	HCCA
BP	GO:0010120	camalexin biosynthetic process	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
BP	GO:0010506	regulation of autophagy	IEP	HCCA
BP	GO:0010508	positive regulation of autophagy	IEP	HCCA
BP	GO:0018958	phenol-containing compound metabolic process	IEP	HCCA
BP	GO:0031329	regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	HCCA
BP	GO:0034605	cellular response to heat	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
BP	GO:0043900	obsolete regulation of multi-organism process	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046217	indole phytoalexin metabolic process	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0052314	phytoalexin metabolic process	IEP	HCCA
BP	GO:0052315	phytoalexin biosynthetic process	IEP	HCCA
BP	GO:0052317	camalexin metabolic process	IEP	HCCA
BP	GO:0070370	cellular heat acclimation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	81

External Links

No external refs found!

AT2G35930 (PUB23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation