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AT2G30780


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0008533 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008533_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G30780
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Aev_g08034 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g33760.1 LOC_Os05g33760 Pentatricopeptide repeat-containing protein At2g30780... 0.03 OrthoFinder output from all 47 species
Solyc07g053060.3.1 Solyc07g053060 Pentatricopeptide repeat-containing protein At2g30780... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032876 negative regulation of DNA endoreduplication IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 139 182
IPR002885 Pentatricopeptide_repeat 207 256
IPR002885 Pentatricopeptide_repeat 423 452
No external refs found!