AT2G28610 (WOX3, PRS1, PRS)

Aliases : WOX3, PRS1, PRS

Description : Homeodomain-like superfamily protein

Gene families : OG0001319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001319_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G28610
Cluster	HCCA: Cluster_123

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00122680	WOX1,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
AMTR_s00012p00149750	WOX2,...	RNA biosynthesis.transcriptional activation.HB...	0.06	OrthoFinder output from all 47 species
AMTR_s00021p00189010	STIP, HB-3,...	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
AMTR_s00023p00181320	WOX3, PRS1, PRS,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
AT2G01500	PFS2, HOS9, WOX6	Homeodomain-like superfamily protein	0.06	OrthoFinder output from all 47 species
AT2G33880	STIP, HB-3, WOX9	homeobox-3	0.08	OrthoFinder output from all 47 species
AT3G11260	WOX5	WUSCHEL related homeobox 5	0.04	OrthoFinder output from all 47 species
AT5G05770	WOX7	WUSCHEL related homeobox 7	0.05	OrthoFinder output from all 47 species
AT5G46010	No alias	Homeodomain-like superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g053615	STIP, HB-3, WOX9	WOX-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene63553.t2	STPL, WOX8,...	WOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0051.g031311	WUS, PGA6, WUS1	WOX-type transcription factor & original description: CDS=1-912	0.04	OrthoFinder output from all 47 species
Ceric.19G009000.1	STIP, HB-3,...	WOX-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.19G009200.1	STPL, WOX8,...	WOX-type transcription factor & original description:...	0.09	OrthoFinder output from all 47 species
Ceric.27G012000.1	WUS, PGA6, WUS1,...	WOX-type transcription factor & original description:...	0.08	OrthoFinder output from all 47 species
GSVIVT01008424001	WOX1	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01009453001	WOX4	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
Gb_12294	No alias	transcription factor (WOX)	0.02	OrthoFinder output from all 47 species
Gb_27283	WOX3, PRS1, PRS	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
LOC_Os01g62310.1	WOX2, LOC_Os01g62310	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
LOC_Os04g56780.1	WUS, PGA6, WUS1,...	transcription factor (WOX)	0.05	OrthoFinder output from all 47 species
LOC_Os05g02730.1	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.13	OrthoFinder output from all 47 species
LOC_Os05g48990.1	STIP, HB-3,...	transcription factor (WOX)	0.14	OrthoFinder output from all 47 species
MA_42637g0010	WOX2	transcription factor (WOX)	0.02	OrthoFinder output from all 47 species
MA_8832398g0010	WOX2	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
MA_921642g0010	WOX1	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014086	STPL, WOX8	WOX-type transcription factor & original description: CDS=1-2016	0.03	OrthoFinder output from all 47 species
Solyc02g077390.2.1	STIP, HB-3,...	transcription factor (WOX)	0.05	OrthoFinder output from all 47 species
Solyc06g075567.1.1	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
Solyc11g072770.2.1	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.05	OrthoFinder output from all 47 species
Spa_g29226	STPL, WOX8	WOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e006644_P002	WUS, PGA6, WUS1,...	transcription factor (WOX)	0.07	OrthoFinder output from all 47 species
Zm00001e009121_P001	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.08	OrthoFinder output from all 47 species
Zm00001e024169_P001	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.16	OrthoFinder output from all 47 species
Zm00001e024170_P001	Zm00001e024170	WUSCHEL-related homeobox 3B OS=Zea mays...	0.17	OrthoFinder output from all 47 species
Zm00001e028776_P002	WOX2, Zm00001e028776	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
Zm00001e029534_P001	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.1	OrthoFinder output from all 47 species
Zm00001e032433_P003	STIP, HB-3,...	transcription factor (WOX)	0.11	OrthoFinder output from all 47 species
Zm00001e041785_P001	WOX4, Zm00001e041785	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
Zm00001e041865_P001	WUS, PGA6, WUS1,...	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008283	cell population proliferation	IMP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009798	axis specification	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009908	flower development	IMP	Interproscan
BP	GO:0009943	adaxial/abaxial axis specification	IMP	Interproscan
BP	GO:0009947	centrolateral axis specification	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010865	stipule development	IMP	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048513	animal organ development	IGI	Interproscan
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002237	response to molecule of bacterial origin	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003756	protein disulfide isomerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009685	gibberellin metabolic process	IEP	HCCA
BP	GO:0009686	gibberellin biosynthetic process	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	HCCA
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
BP	GO:0016101	diterpenoid metabolic process	IEP	HCCA
BP	GO:0016102	diterpenoid biosynthetic process	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016864	intramolecular oxidoreductase activity, transposing S-S bonds	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0043621	protein self-association	IEP	HCCA
BP	GO:0048366	leaf development	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048444	floral organ morphogenesis	IEP	HCCA
BP	GO:0048446	petal morphogenesis	IEP	HCCA
BP	GO:0048448	stamen morphogenesis	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048455	stamen formation	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0048825	cotyledon development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0048859	formation of anatomical boundary	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0090691	formation of plant organ boundary	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:2000024	regulation of leaf development	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	7	66

External Links

No external refs found!

AT2G28610 (WOX3, PRS1, PRS)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation