AT2G27840 (HDA13, HDT04, HDT4)

Aliases : HDA13, HDT04, HDT4

Description : histone deacetylase-related / HD-related

Gene families : OG0002165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G27840

Target	Alias	Description	ECC score	Gene Family Method
Adi_g045241	HDT3, HD2C	HD2-type histone deacetylase *(HD2/HDT) & original...	0.02	OrthoFinder output from all 47 species
Aop_g12332	HDA3, ATHD2A, HDT1, HD2A	HD2-type histone deacetylase *(HD2/HDT) & original...	0.05	OrthoFinder output from all 47 species
Aop_g15503	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Azfi_s0245.g060013	No alias	not classified & original description: CDS=211-1146	0.03	OrthoFinder output from all 47 species
Ceric.33G031600.1	HDA3, ATHD2A,...	HD2-type histone deacetylase *(HD2/HDT) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000388.65	ATFKBP53, FKBP53	Protein modification.protein folding and quality...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.33	No alias	Chromatin organisation.histone modifications.histone...	0.02	OrthoFinder output from all 47 species
Dac_g11095	HDA3, ATHD2A, HDT1, HD2A	HD2-type histone deacetylase *(HD2/HDT) & original...	0.02	OrthoFinder output from all 47 species
Dcu_g41486	HDA3, ATHD2A, HDT1, HD2A	HD2-type histone deacetylase *(HD2/HDT) & original...	0.02	OrthoFinder output from all 47 species
Dde_g20303	HDA3, ATHD2A, HDT1, HD2A	HD2-type histone deacetylase *(HD2/HDT) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g03373	HDA3, ATHD2A, HDT1, HD2A	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.02	OrthoFinder output from all 47 species
Ehy_g20489	HDA3, ATHD2A, HDT1, HD2A	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01031404001	HDA3, ATHD2A, HDT1, HD2A	Chromatin organisation.histone modifications.histone...	0.08	OrthoFinder output from all 47 species
Len_g17092	HDA3, ATHD2A, HDT1, HD2A	HD2-type histone deacetylase *(HD2/HDT) & original...	0.03	OrthoFinder output from all 47 species
MA_118767g0010	HDA3, ATHD2A, HDT1, HD2A	histone deacetylase (HDT/HD2)	0.02	OrthoFinder output from all 47 species
MA_3905g0020	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_601245g0010	No alias	histone deacetylase (HDT/HD2)	0.04	OrthoFinder output from all 47 species
Mp5g10240.1	HDA3, ATHD2A, HDT1, HD2A	histone deacetylase (HDT/HD2)	0.02	OrthoFinder output from all 47 species
Nbi_g12444	HDA3, ATHD2A, HDT1, HD2A	HD2-type histone deacetylase *(HD2/HDT) & original...	0.03	OrthoFinder output from all 47 species
Ore_g06815	HD2, HDA4, HD2B,...	HD2-type histone deacetylase *(HD2/HDT) & original...	0.02	OrthoFinder output from all 47 species
Sam_g14661	No alias	HD2-type histone deacetylase *(HD2/HDT) & original...	0.04	OrthoFinder output from all 47 species
Smo428242	No alias	Chromatin organisation.histone modifications.histone...	0.03	OrthoFinder output from all 47 species
Solyc09g009030.4.1	HDA3, ATHD2A,...	histone deacetylase (HDT/HD2)	0.04	OrthoFinder output from all 47 species
Solyc11g066840.3.1	HD2, HDA4, HD2B,...	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Spa_g40541	HDT3, HD2C	HD2-type histone deacetylase *(HD2/HDT) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e027707_P004	HDT3, HD2C,...	histone deacetylase (HDT/HD2)	0.04	OrthoFinder output from all 47 species
Zm00001e032246_P002	HDA3, ATHD2A,...	histone deacetylase (HDT/HD2)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004407	histone deacetylase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010162	seed dormancy process	IEP	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	None	Extended
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
MF	GO:0019213	deacetylase activity	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0030422	siRNA processing	IGI	Interproscan
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0033558	protein lysine deacetylase activity	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0070918	regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT2G27840 (HDA13, HDT04, HDT4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation