AT2G27170 (TTN7, SMC3)

Aliases : TTN7, SMC3

Description : Structural maintenance of chromosomes (SMC) family protein

Gene families : OG0003981 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003981_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G27170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00198530	TTN7, SMC3,...	Cell cycle.mitosis and meiosis.sister chromatid...	0.04	OrthoFinder output from all 47 species
AMTR_s00029p00198810	TTN7, SMC3,...	Cell cycle.mitosis and meiosis.sister chromatid...	0.06	OrthoFinder output from all 47 species
Adi_g076982	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.1	OrthoFinder output from all 47 species
Als_g10466	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.07	OrthoFinder output from all 47 species
Aob_g19956	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.07	OrthoFinder output from all 47 species
Azfi_s0147.g053026	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Cba_g02732	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.02	OrthoFinder output from all 47 species
Ceric.05G021600.1	TTN7, SMC3,...	component *(SMC3/TTN7) of cohesin regulator complex &...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000711.46	TTN7, SMC3	Structural maintenance of chromosomes protein 3...	0.02	OrthoFinder output from all 47 species
Cre10.g445650	TTN7, SMC3	Cell cycle.mitosis and meiosis.sister chromatid...	0.05	OrthoFinder output from all 47 species
Dac_g05785	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.04	OrthoFinder output from all 47 species
Dcu_g09520	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.05	OrthoFinder output from all 47 species
GSVIVT01033181001	TTN7, SMC3	Cell cycle.mitosis and meiosis.sister chromatid...	0.14	OrthoFinder output from all 47 species
LOC_Os02g04040.1	TTN7, SMC3,...	component SMC3/TTN7 of cohesin regulator complex	0.06	OrthoFinder output from all 47 species
LOC_Os02g04050.1	TTN7, SMC3,...	component SMC3/TTN7 of cohesin regulator complex	0.06	OrthoFinder output from all 47 species
MA_10427183g0010	TTN7, SMC3	component SMC3/TTN7 of cohesin regulator complex	0.03	OrthoFinder output from all 47 species
Mp5g09700.1	TTN7, SMC3	component SMC3/TTN7 of cohesin regulator complex	0.04	OrthoFinder output from all 47 species
Msp_g15587	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Nbi_g04455	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.04	OrthoFinder output from all 47 species
Ppi_g01382	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.02	OrthoFinder output from all 47 species
Sam_g08063	No alias	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Solyc06g073780.4.1	TTN7, SMC3,...	component SMC3/TTN7 of cohesin regulator complex	0.1	OrthoFinder output from all 47 species
Spa_g10771	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.02	OrthoFinder output from all 47 species
Tin_g03549	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.04	OrthoFinder output from all 47 species
Zm00001e032592_P001	TTN7, SMC3,...	component SMC3/TTN7 of cohesin regulator complex	0.15	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
CC	GO:0000785	chromatin	IDA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005819	spindle	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	IMP	Interproscan
BP	GO:0007059	chromosome segregation	ISS	Interproscan
BP	GO:0007062	sister chromatid cohesion	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0008278	cohesin complex	ISS	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010267	ta-siRNA processing	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0016363	nuclear matrix	IDA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030422	siRNA processing	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035196	miRNA processing	RCA	Interproscan
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051607	defense response to virus	RCA	Interproscan
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070918	regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
CC	GO:0000932	P-body	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0002213	defense response to insect	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004084	branched-chain-amino-acid transaminase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006513	protein monoubiquitination	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009845	seed germination	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010162	seed dormancy process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
BP	GO:0010390	histone monoubiquitination	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016233	telomere capping	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016574	histone ubiquitination	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022611	dormancy process	IEP	HCCA
CC	GO:0030870	Mre11 complex	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031400	negative regulation of protein modification process	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
CC	GO:0032588	trans-Golgi network membrane	IEP	HCCA
BP	GO:0033233	regulation of protein sumoylation	IEP	HCCA
BP	GO:0033234	negative regulation of protein sumoylation	IEP	HCCA
BP	GO:0033523	histone H2B ubiquitination	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
CC	GO:0035770	ribonucleoprotein granule	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0045787	positive regulation of cell cycle	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045931	positive regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048366	leaf development	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048645	animal organ formation	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1901420	negative regulation of response to alcohol	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	HCCA
BP	GO:2000023	regulation of lateral root development	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000069	regulation of post-embryonic root development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA
BP	GO:2000280	regulation of root development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010935	SMC_hinge	522	633
IPR003395	RecF/RecN/SMC_N	2	1180

External Links

No external refs found!

AT2G27170 (TTN7, SMC3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation