AT2G25170 (PKL, GYM, CHR6, SSL2, CHD3)

Aliases : PKL, GYM, CHR6, SSL2, CHD3

Description : chromatin remodeling factor CHD3 (PICKLE)

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G25170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00058700	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.05	OrthoFinder output from all 47 species
AMTR_s00086p00165640	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.06	OrthoFinder output from all 47 species
AMTR_s00090p00148990	SYD, CHR3,...	Chromatin organisation.chromatin remodeling...	0.09	OrthoFinder output from all 47 species
Adi_g011986	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Adi_g012014	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Adi_g061147	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Adi_g104730	PKL, GYM, CHR6,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107365	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.05	OrthoFinder output from all 47 species
Aev_g03411	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Aev_g09087	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g41954	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Ala_g02726	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Ala_g11507	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.06	OrthoFinder output from all 47 species
Ala_g12634	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g17670	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Ala_g27421	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g36219	ATCHR12	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g01984	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Als_g16533	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g22693	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.02	OrthoFinder output from all 47 species
Als_g56902	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Als_g59182	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.09	OrthoFinder output from all 47 species
Aob_g12795	CHR11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g29249	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Aob_g29989	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Aop_g08885	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g13768	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Aop_g20304	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g27471	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene24030.t1	CHR5, Aspi01Gene24030	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene52538.t1	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0013.g013433	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Azfi_s0129.g048917	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0335.g065512	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0754.g085337	No alias	not classified & original description: CDS=1-1965	0.05	OrthoFinder output from all 47 species
Ceric.03G025400.1	PKL, GYM, CHR6,...	not classified & original description: pacid=50572032...	0.03	OrthoFinder output from all 47 species
Ceric.10G020300.1	CHR5, Ceric.10G020300	component *(CHR5) of SAGA transcription co-activator...	0.08	OrthoFinder output from all 47 species
Ceric.19G069200.1	CHR11, Ceric.19G069200	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Ceric.1Z205000.1	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.09	OrthoFinder output from all 47 species
Ceric.36G015700.1	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Ceric.37G008600.1	SYD, CHR3,...	SMARCA component *(SYD/BRM/MINU) & original description:...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000350.9	PKR2	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.26	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020960.24	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Cre03.g158550	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
Cre03.g179300	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Cre08.g377200	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.05	OrthoFinder output from all 47 species
Cre09.g390000	CHR17	RNA biosynthesis.transcriptional activation.PHD finger...	0.04	OrthoFinder output from all 47 species
Cre12.g508150	CHR11	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Dac_g10723	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Dac_g15532	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g22364	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g02069	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Dcu_g03207	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Dcu_g03216	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Dcu_g07767	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g19159	CHR11	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Dcu_g38948	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g42511	PKL, GYM, CHR6,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g03505	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Dde_g09827	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10042	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Ehy_g19433	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01012117001	PKR1, CHR4	RNA biosynthesis.transcriptional activation.PHD finger...	0.05	OrthoFinder output from all 47 species
GSVIVT01017791001	CHR17	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01017820001	SYD, CHR3	Chromatin organisation.chromatin remodeling...	0.06	OrthoFinder output from all 47 species
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.05	OrthoFinder output from all 47 species
GSVIVT01018979001	CHR01, CHR1,...	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01035901001	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.12	OrthoFinder output from all 47 species
GSVIVT01037235001	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
Gb_16310	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_16961	PKR1, CHR4	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Gb_18673	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.04	OrthoFinder output from all 47 species
Gb_35181	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	OrthoFinder output from all 47 species
LOC_Os01g27040.1	CHR17, LOC_Os01g27040	chromatin remodeling factor (Iswi)	0.03	OrthoFinder output from all 47 species
LOC_Os06g08480.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.04	OrthoFinder output from all 47 species
LOC_Os07g31450.1	PKR1, CHR4,...	chromatin remodeling factor (Chd3/Mi-2)	0.07	OrthoFinder output from all 47 species
Len_g01407	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Len_g08675	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Len_g11421	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Len_g57697	PKL, GYM, CHR6,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g02374	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g04300	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g06769	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Lfl_g16058	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.07	OrthoFinder output from all 47 species
Lfl_g28014	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g30624	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
MA_102992g0020	CHR11	Probable chromatin-remodeling complex ATPase chain...	0.05	OrthoFinder output from all 47 species
MA_10427196g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.07	OrthoFinder output from all 47 species
MA_10429361g0010	CHR5	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	OrthoFinder output from all 47 species
MA_10430012g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
MA_127544g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
MA_141135g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
MA_23378g0020	ATCHR12	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_42406g0010	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.02	OrthoFinder output from all 47 species
MA_8926002g0010	SYD, CHR3	Chromatin structure-remodeling complex protein SYD...	0.06	OrthoFinder output from all 47 species
Mp1g18560.1	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.06	OrthoFinder output from all 47 species
Mp2g26680.1	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.04	OrthoFinder output from all 47 species
Mp3g15030.1	CHR17	chromatin remodeling factor (Iswi)	0.03	OrthoFinder output from all 47 species
Mp4g00040.1	PKR1, CHR4	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Mp5g24460.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.05	OrthoFinder output from all 47 species
Mp8g17660.1	ATCHR12	chromatin remodeling factor (Snf2)	0.02	OrthoFinder output from all 47 species
Msp_g13206	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Msp_g13222	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14786	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g14790	CHR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g44223	CHR11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g10938	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g10377	CHR17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g18803	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Ore_g23086	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25685	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ore_g36640	PKL, GYM, CHR6,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g15839	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g16211	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g16726	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Ppi_g05325	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Ppi_g13843	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g16735	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g32094	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002414	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005448	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008777	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018691	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g17473	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g29220	No alias	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Sam_g29292	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Sam_g36172	No alias	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g36819	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Sam_g49524	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g50989	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo102849	ATCHR12	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Smo130534	PKR1, CHR4	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Smo155996	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Smo177985	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Smo440815	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
Solyc01g067390.4.1	CHR11, Solyc01g067390	chromatin remodeling factor (Iswi)	0.05	OrthoFinder output from all 47 species
Solyc02g068560.3.1	PKR1, CHR4,...	chromatin remodeling factor (Chd3/Mi-2)	0.06	OrthoFinder output from all 47 species
Solyc06g065730.3.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.07	OrthoFinder output from all 47 species
Solyc08g029130.3.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.03	OrthoFinder output from all 47 species
Solyc11g062010.3.1	SYD, CHR3, Solyc11g062010	chromatin remodeling factor (Snf2)	0.08	OrthoFinder output from all 47 species
Spa_g06215	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g09028	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g17788	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g21583	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.04	OrthoFinder output from all 47 species
Spa_g21765	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Spa_g24876	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g08468	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g09616	No alias	chromaTin remodeling factor *(ALC1) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g14271	PKL, GYM, CHR6,...	CHD3-type chromaTin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Zm00001e011541_P001	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.03	OrthoFinder output from all 47 species
Zm00001e026331_P001	CHR17, Zm00001e026331	chromatin remodeling factor (Iswi)	0.04	OrthoFinder output from all 47 species
Zm00001e030969_P003	SYD, CHR3, Zm00001e030969	chromatin remodeling factor (Snf2)	0.03	OrthoFinder output from all 47 species
Zm00001e040406_P002	ATCHR12, Zm00001e040406	chromatin remodeling factor (Snf2)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003678	DNA helicase activity	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0007165	signal transduction	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008283	cell population proliferation	IMP	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IMP	Interproscan
BP	GO:0009736	cytokinin-activated signaling pathway	IMP	Interproscan
BP	GO:0009739	response to gibberellin	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	None	Extended
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISS	Interproscan
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IMP	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048364	root development	IMP	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:0140718	facultative heterochromatin formation	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901419	regulation of response to alcohol	None	Extended
BP	GO:1901420	negative regulation of response to alcohol	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905957	regulation of cellular response to alcohol	None	Extended
BP	GO:1905958	negative regulation of cellular response to alcohol	None	Extended
BP	GO:2000023	regulation of lateral root development	IMP	Interproscan
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000069	regulation of post-embryonic root development	None	Extended
BP	GO:2000280	regulation of root development	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
CC	GO:0000785	chromatin	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006482	protein demethylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0008214	protein dealkylation	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
CC	GO:0008278	cohesin complex	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
BP	GO:0009903	chloroplast avoidance movement	IEP	HCCA
BP	GO:0009904	chloroplast accumulation movement	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
CC	GO:0016363	nuclear matrix	IEP	HCCA
BP	GO:0016577	histone demethylation	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031056	regulation of histone modification	IEP	HCCA
BP	GO:0031057	negative regulation of histone modification	IEP	HCCA
BP	GO:0031400	negative regulation of protein modification process	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033169	histone H3-K9 demethylation	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0035065	regulation of histone acetylation	IEP	HCCA
BP	GO:0035067	negative regulation of histone acetylation	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0047484	regulation of response to osmotic stress	IEP	HCCA
BP	GO:0048366	leaf development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0070076	histone lysine demethylation	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0070988	demethylation	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
BP	GO:1901000	regulation of response to salt stress	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901983	regulation of protein acetylation	IEP	HCCA
BP	GO:1901984	negative regulation of protein acetylation	IEP	HCCA
BP	GO:2000756	regulation of peptidyl-lysine acetylation	IEP	HCCA
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	596	709
IPR019787	Znf_PHD-finger	52	94
IPR023780	Chromo_domain	191	239
IPR023780	Chromo_domain	99	154
IPR009462	CHD_II_SANT-like	921	1054
IPR009463	DUF1087	830	891
IPR000330	SNF2_N	293	572

External Links

No external refs found!

AT2G25170 (PKL, GYM, CHR6, SSL2, CHD3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation