Aliases : PABP4, PAB4
Description : poly(A) binding protein 4
Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Adi_g088081 | PAB2, PABP2, ATPAB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g05955 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g13336 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g10012 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.29G016700.1 | PAB2, PABP2,... | mRNA poly-A-tail binding factor *(PABP) & original... | 0.05 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001264.28 | PAB8, PABP8 | Protein biosynthesis.translation initiation.mRNA... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021244.20 | PAB8, PABP8 | Protein biosynthesis.translation initiation.mRNA... | 0.03 | OrthoFinder output from all 47 species | |
Cre01.g039300 | PAB8, PABP8 | Protein biosynthesis.translation initiation.mRNA... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01031709001 | PAB2, PABP2, ATPAB2 | Protein biosynthesis.translation initiation.mRNA... | 0.03 | OrthoFinder output from all 47 species | |
Gb_00731 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor (PABP) | 0.02 | OrthoFinder output from all 47 species | |
Gb_11804 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor (PABP) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os09g02700.1 | PAB8, PABP8,... | mRNA poly-A-tail binding factor (PABP) | 0.06 | OrthoFinder output from all 47 species | |
MA_111003g0010 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor (PABP) | 0.05 | OrthoFinder output from all 47 species | |
Mp7g18970.1 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor (PABP) | 0.07 | OrthoFinder output from all 47 species | |
Nbi_g14035 | PAB8, PABP8 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g17615 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0157.g023696 | PAB8, PABP8 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.05 | OrthoFinder output from all 47 species | |
Solyc12g088720.2.1 | PAB2, PABP2,... | mRNA poly-A-tail binding factor (PABP) | 0.03 | OrthoFinder output from all 47 species | |
Tin_g14974 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e009430_P002 | PAB2, PABP2,... | mRNA poly-A-tail binding factor (PABP) | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e033592_P004 | PAB8, PABP8,... | mRNA poly-A-tail binding factor (PABP) | 0.09 | OrthoFinder output from all 47 species | |
Zm00001e041182_P002 | PAB8, PABP8,... | mRNA poly-A-tail binding factor (PABP) | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | ISS | Interproscan |
MF | GO:0003743 | translation initiation factor activity | ISS | Interproscan |
MF | GO:0005515 | protein binding | IPI | Interproscan |
CC | GO:0005829 | cytosol | IDA | Interproscan |
BP | GO:0046686 | response to cadmium ion | IEP | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004056 | argininosuccinate lyase activity | IEP | HCCA |
MF | GO:0004455 | ketol-acid reductoisomerase activity | IEP | HCCA |
MF | GO:0005507 | copper ion binding | IEP | HCCA |
BP | GO:0006006 | glucose metabolic process | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006094 | gluconeogenesis | IEP | HCCA |
BP | GO:0006096 | glycolytic process | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006553 | lysine metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008836 | diaminopimelate decarboxylase activity | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | HCCA |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | HCCA |
BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009085 | lysine biosynthetic process | IEP | HCCA |
BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | HCCA |
BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009218 | pyrimidine ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009220 | pyrimidine ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
CC | GO:0009507 | chloroplast | IEP | HCCA |
CC | GO:0009532 | plastid stroma | IEP | HCCA |
CC | GO:0009536 | plastid | IEP | HCCA |
BP | GO:0009555 | pollen development | IEP | HCCA |
CC | GO:0009570 | chloroplast stroma | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0016829 | lyase activity | IEP | HCCA |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | HCCA |
MF | GO:0016842 | amidine-lyase activity | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019318 | hexose metabolic process | IEP | HCCA |
BP | GO:0019319 | hexose biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
BP | GO:0046364 | monosaccharide biosynthetic process | IEP | HCCA |
BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
BP | GO:0046451 | diaminopimelate metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
BP | GO:0048229 | gametophyte development | IEP | HCCA |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No external refs found! |