AT2G17950 (WUS, PGA6, WUS1)

Aliases : WUS, PGA6, WUS1

Description : Homeodomain-like superfamily protein

Gene families : OG0001319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001319_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G17950
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00181320	WOX3, PRS1, PRS,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
AMTR_s00051p00020930	WOX4,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
AMTR_s00405p00009920	WUS, PGA6, WUS1,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
AT1G46480	WOX4	WUSCHEL related homeobox 4	0.05	OrthoFinder output from all 47 species
Aop_g35638	STPL, WOX8	WOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g32131	STPL, WOX8	WOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008424001	WOX1	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01009453001	WOX4	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01018787001	WUS, PGA6, WUS1	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01025075001	WOX3, PRS1, PRS	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
LOC_Os04g56780.1	WUS, PGA6, WUS1,...	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
MA_10344604g0010	STIP, HB-3, WOX9	transcription factor (WOX)	0.02	OrthoFinder output from all 47 species
MA_747816g0010	STPL, WOX8	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
MA_8832398g0010	WOX2	transcription factor (WOX)	0.02	OrthoFinder output from all 47 species
Solyc02g077390.2.1	STIP, HB-3,...	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Solyc03g118770.4.1	WOX1, Solyc03g118770	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
Solyc04g078650.4.1	WOX4, Solyc04g078650	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
Solyc06g075567.1.1	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
Zm00001e009121_P001	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Zm00001e024169_P001	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.07	OrthoFinder output from all 47 species
Zm00001e024170_P001	Zm00001e024170	WUSCHEL-related homeobox 3B OS=Zea mays...	0.05	OrthoFinder output from all 47 species
Zm00001e032433_P003	STIP, HB-3,...	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010074	maintenance of meristem identity	None	Extended
BP	GO:0010093	specification of floral organ identity	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010492	maintenance of shoot apical meristem identity	IGI	Interproscan
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019827	stem cell population maintenance	IMP	Interproscan
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045471	response to ethanol	IEP	Interproscan
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048440	carpel development	RCA	Interproscan
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048653	anther development	IMP	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080166	stomium development	IMP	Interproscan
BP	GO:0090701	specification of plant organ identity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0098727	maintenance of cell number	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	HCCA
MF	GO:0004084	branched-chain-amino-acid transaminase activity	IEP	HCCA
MF	GO:0004311	farnesyltranstransferase activity	IEP	HCCA
MF	GO:0004659	prenyltransferase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
MF	GO:0008146	sulfotransferase activity	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0010226	response to lithium ion	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	HCCA
BP	GO:0019953	sexual reproduction	IEP	HCCA
MF	GO:0030570	pectate lyase activity	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	37	97

External Links

No external refs found!

AT2G17950 (WUS, PGA6, WUS1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation