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  5. AT2G13370

AT2G13370 (CHR5)


Aliases : CHR5

Description : chromatin remodeling 5


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G13370

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00098350 CHR5,... RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
AMTR_s00071p00058700 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.03 OrthoFinder output from all 47 species
AMTR_s00086p00165640 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.09 OrthoFinder output from all 47 species
AMTR_s00090p00148990 SYD, CHR3,... Chromatin organisation.chromatin remodeling... 0.15 OrthoFinder output from all 47 species
Adi_g011986 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Adi_g012014 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Adi_g061147 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Adi_g078005 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g082550 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g104730 PKL, GYM, CHR6,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g107365 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Adi_g107421 SYD, CHR3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03411 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Aev_g04898 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g09087 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g13876 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Aev_g41954 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Ala_g02726 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.18 OrthoFinder output from all 47 species
Ala_g11507 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.11 OrthoFinder output from all 47 species
Ala_g12634 PKL, GYM, CHR6,... not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g17670 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.12 OrthoFinder output from all 47 species
Ala_g27421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.14 OrthoFinder output from all 47 species
Ala_g36219 ATCHR12 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g01971 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01984 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.08 OrthoFinder output from all 47 species
Als_g05142 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16533 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g56902 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.13 OrthoFinder output from all 47 species
Als_g59182 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.08 OrthoFinder output from all 47 species
Aob_g18378 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aob_g29249 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.11 OrthoFinder output from all 47 species
Aob_g29989 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Aop_g13607 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Aop_g20304 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27471 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene14150.t2 CHR11, Aspi01Gene14150 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24029.t1 CHR5, Aspi01Gene24029 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24030.t1 CHR5, Aspi01Gene24030 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene25758.t1 SYD, CHR3,... SMARCA component *(SYD/BRM/MINU) & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene47132.t1 SYD, CHR3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52534.t1 PKL, GYM, CHR6,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene52538.t1 PKL, GYM, CHR6,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene52539.t1 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62384.t3 PKR1, CHR4,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene70267.t1 Aspi01Gene70267 chromatin remodeling factor *(ALC1) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010662 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0335.g065512 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description:... 0.06 OrthoFinder output from all 47 species
Cba_g33620 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ceric.03G025400.1 PKL, GYM, CHR6,... not classified & original description: pacid=50572032... 0.07 OrthoFinder output from all 47 species
Ceric.06G006600.1 ATCHR12, Ceric.06G006600 SMARCA component *(SYD/BRM/MINU) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G020300.1 CHR5, Ceric.10G020300 component *(CHR5) of SAGA transcription co-activator... 0.15 OrthoFinder output from all 47 species
Ceric.19G069200.1 CHR11, Ceric.19G069200 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.05 OrthoFinder output from all 47 species
Ceric.1Z205000.1 PKR1, CHR4,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.07 OrthoFinder output from all 47 species
Ceric.36G015700.1 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.09 OrthoFinder output from all 47 species
Ceric.37G008600.1 SYD, CHR3,... SMARCA component *(SYD/BRM/MINU) & original description:... 0.14 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.25 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000350.9 PKR2 CHD3-type chromatin-remodeling factor PICKLE... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000983.26 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.66 No alias Probable helicase CHR10 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020960.24 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021623.13 PKL, GYM, CHR6,... RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
Cre03.g158550 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.01 OrthoFinder output from all 47 species
Cre03.g179300 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Cre08.g377200 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.04 OrthoFinder output from all 47 species
Cre09.g390000 CHR17 RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
Cre12.g508150 CHR11 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dac_g10723 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Dac_g15532 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02069 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.13 OrthoFinder output from all 47 species
Dcu_g03207 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.07 OrthoFinder output from all 47 species
Dcu_g03216 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.12 OrthoFinder output from all 47 species
Dcu_g07767 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g19159 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.06 OrthoFinder output from all 47 species
Dcu_g34346 No alias chromatin remodeling factor *(ALC1) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38948 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.18 OrthoFinder output from all 47 species
Dcu_g42511 PKL, GYM, CHR6,... not classified & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g03505 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Dde_g09827 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g10991 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Dde_g15247 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ehy_g10042 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ehy_g15984 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18387 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ehy_g19433 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012117001 PKR1, CHR4 RNA biosynthesis.transcriptional activation.PHD finger... 0.15 OrthoFinder output from all 47 species
GSVIVT01017791001 CHR17 Chromatin organisation.chromatin remodeling... 0.07 OrthoFinder output from all 47 species
GSVIVT01017820001 SYD, CHR3 Chromatin organisation.chromatin remodeling... 0.19 OrthoFinder output from all 47 species
GSVIVT01017921001 ATCHR12 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01035901001 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01037235001 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.18 OrthoFinder output from all 47 species
Gb_05671 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.07 OrthoFinder output from all 47 species
Gb_16961 PKR1, CHR4 chromatin remodeling factor (Chd3/Mi-2) 0.08 OrthoFinder output from all 47 species
Gb_27153 ATCHR12 chromatin remodeling factor (Snf2) 0.09 OrthoFinder output from all 47 species
Gb_35181 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.05 OrthoFinder output from all 47 species
LOC_Os05g05230.1 ATCHR12, LOC_Os05g05230 chromatin remodeling factor (Snf2) 0.05 OrthoFinder output from all 47 species
LOC_Os06g08480.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.06 OrthoFinder output from all 47 species
LOC_Os07g31450.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.09 OrthoFinder output from all 47 species
LOC_Os07g46590.1 CHR5, LOC_Os07g46590 chromatin remodeling factor (Chd1). component CHR5 of... 0.04 OrthoFinder output from all 47 species
Len_g01407 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.08 OrthoFinder output from all 47 species
Len_g08675 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.12 OrthoFinder output from all 47 species
Len_g11421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g29294 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Len_g35371 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g57697 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02374 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04300 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g06769 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.08 OrthoFinder output from all 47 species
Lfl_g16058 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.12 OrthoFinder output from all 47 species
Lfl_g28014 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g30624 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.11 OrthoFinder output from all 47 species
MA_102992g0020 CHR11 Probable chromatin-remodeling complex ATPase chain... 0.04 OrthoFinder output from all 47 species
MA_10427196g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.06 OrthoFinder output from all 47 species
MA_10429361g0010 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.07 OrthoFinder output from all 47 species
MA_10430012g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.04 OrthoFinder output from all 47 species
MA_141135g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.05 OrthoFinder output from all 47 species
MA_8926002g0010 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.09 OrthoFinder output from all 47 species
Mp1g05480.1 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.11 OrthoFinder output from all 47 species
Mp1g18560.1 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Mp2g26680.1 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.06 OrthoFinder output from all 47 species
Mp4g00040.1 PKR1, CHR4 chromatin remodeling factor (Chd3/Mi-2) 0.08 OrthoFinder output from all 47 species
Mp5g06580.2 SYD, CHR3 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species
Mp5g24460.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.04 OrthoFinder output from all 47 species
Msp_g13206 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.09 OrthoFinder output from all 47 species
Msp_g13222 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14766 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14786 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g15707 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.13 OrthoFinder output from all 47 species
Msp_g16227 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Nbi_g02510 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Nbi_g10938 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g12025 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Nbi_g39328 PKL, GYM, CHR6,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g12701 CHR11 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g16130 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g18803 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Ore_g25685 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Ore_g26259 SYD, CHR3 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g11423 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Pir_g15839 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g16211 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g16726 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Pir_g37964 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Pnu_g01753 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07018 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Pp3c10_2280V3.1 PKL, GYM, CHR6,... chromatin remodeling 4 0.03 OrthoFinder output from all 47 species
Ppi_g04716 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ppi_g05325 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Ppi_g13843 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g32094 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002414 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008777 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018691 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018707 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description:... 0.04 OrthoFinder output from all 47 species
Sam_g14615 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16204 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.1 OrthoFinder output from all 47 species
Sam_g17473 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g29220 No alias component *(CHR5) of SAGA transcription co-activator... 0.13 OrthoFinder output from all 47 species
Sam_g29292 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.06 OrthoFinder output from all 47 species
Sam_g36172 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g36819 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Sam_g49524 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo102849 ATCHR12 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Smo155996 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.08 OrthoFinder output from all 47 species
Smo177985 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.07 OrthoFinder output from all 47 species
Smo440203 CHR11 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Smo440815 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.1 OrthoFinder output from all 47 species
Solyc01g067390.4.1 CHR11, Solyc01g067390 chromatin remodeling factor (Iswi) 0.04 OrthoFinder output from all 47 species
Solyc02g068560.3.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.07 OrthoFinder output from all 47 species
Solyc06g065730.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.07 OrthoFinder output from all 47 species
Solyc08g029130.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.04 OrthoFinder output from all 47 species
Solyc11g062010.3.1 SYD, CHR3, Solyc11g062010 chromatin remodeling factor (Snf2) 0.16 OrthoFinder output from all 47 species
Solyc12g099910.2.1 CHR5, Solyc12g099910 chromatin remodeling factor (Chd1). component CHR5 of... 0.06 OrthoFinder output from all 47 species
Spa_g06215 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12616 PKL, GYM, CHR6,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g17788 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g21583 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Spa_g21765 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Spa_g24876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30961 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Tin_g08468 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g14271 PKL, GYM, CHR6,... CHD3-type chromaTin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Zm00001e010722_P005 ATCHR12, Zm00001e010722 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e010908_P001 CHR5, Zm00001e010908 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e026331_P001 CHR17, Zm00001e026331 chromatin remodeling factor (Iswi) 0.03 OrthoFinder output from all 47 species
Zm00001e030969_P003 SYD, CHR3, Zm00001e030969 chromatin remodeling factor (Snf2) 0.14 OrthoFinder output from all 47 species
Zm00001e040406_P002 ATCHR12, Zm00001e040406 chromatin remodeling factor (Snf2) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003682 chromatin binding ISS Interproscan
MF GO:0004386 helicase activity ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
CC GO:0000932 P-body IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005884 actin filament IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007032 endosome organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008022 protein C-terminus binding IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008154 actin polymerization or depolymerization IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009292 horizontal gene transfer IEP HCCA
BP GO:0009294 DNA-mediated transformation IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009660 amyloplast organization IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009896 positive regulation of catabolic process IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0009959 negative gravitropism IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010098 suspensor development IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
CC GO:0010445 nuclear dicing body IEP HCCA
BP GO:0010599 lsiRNA processing IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016233 telomere capping IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030042 actin filament depolymerization IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
CC GO:0030870 Mre11 complex IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031053 primary miRNA processing IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031331 positive regulation of cellular catabolic process IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
CC GO:0032588 trans-Golgi network membrane IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0033233 regulation of protein sumoylation IEP HCCA
BP GO:0033234 negative regulation of protein sumoylation IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034249 negative regulation of amide metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035195 miRNA-mediated gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0035279 miRNA-mediated gene silencing by mRNA destabilization IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043487 regulation of RNA stability IEP HCCA
BP GO:0043488 regulation of mRNA stability IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050779 RNA destabilization IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051014 actin filament severing IEP HCCA
MF GO:0051015 actin filament binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
BP GO:0051261 protein depolymerization IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0051764 actin crosslink formation IEP HCCA
BP GO:0061013 regulation of mRNA catabolic process IEP HCCA
BP GO:0061014 positive regulation of mRNA catabolic process IEP HCCA
BP GO:0061157 mRNA destabilization IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901420 negative regulation of response to alcohol IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
BP GO:1903313 positive regulation of mRNA metabolic process IEP HCCA
BP GO:1903320 regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1905958 negative regulation of cellular response to alcohol IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR023780 Chromo_domain 534 588
IPR001650 Helicase_C 940 1053
IPR000330 SNF2_N 645 913
IPR025260 CHD1-like_C 1533 1627
No external refs found!