AT1G80270 (PPR596)

Aliases : PPR596

Description : PENTATRICOPEPTIDE REPEAT 596

Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G80270
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00019470	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g80270,...	0.06	OrthoFinder output from all 47 species
AMTR_s00095p00027730	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g80270,...	0.04	OrthoFinder output from all 47 species
AMTR_s00135p00094680	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g27460...	0.01	OrthoFinder output from all 47 species
Aev_g10403	PPR596	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g11231	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.17G065300.1	Ceric.17G065300	RNA editing factor *(POCO) & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g21533	No alias	RNA editing factor *(POCO) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g08858	No alias	RNA editing factor *(POCO) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03895	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01002065001	No alias	Pentatricopeptide repeat-containing protein At4g21705,...	0.06	OrthoFinder output from all 47 species
GSVIVT01006654001	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.15	OrthoFinder output from all 47 species
GSVIVT01020533001	No alias	Pentatricopeptide repeat-containing protein At2g20710,...	0.04	OrthoFinder output from all 47 species
GSVIVT01031246001	No alias	Pentatricopeptide repeat-containing protein At4g01990,...	0.12	OrthoFinder output from all 47 species
GSVIVT01033642001	No alias	Pentatricopeptide repeat-containing protein At1g80270,...	0.1	OrthoFinder output from all 47 species
Gb_20238	No alias	RNA editing factor (POCO)	0.05	OrthoFinder output from all 47 species
Gb_27873	No alias	RNA editing factor (POCO)	0.07	OrthoFinder output from all 47 species
LOC_Os01g17320.1	PPR596, LOC_Os01g17320	RNA editing factor (POCO)	0.04	OrthoFinder output from all 47 species
LOC_Os01g19490.1	LOC_Os01g19490	Pentatricopeptide repeat-containing protein At4g01990,...	0.04	OrthoFinder output from all 47 species
LOC_Os04g25410.1	LOC_Os04g25410	Pentatricopeptide repeat-containing protein At1g60770...	0.06	OrthoFinder output from all 47 species
LOC_Os04g37720.1	LOC_Os04g37720	Pentatricopeptide repeat-containing protein At5g09450,...	0.03	OrthoFinder output from all 47 species
LOC_Os07g12140.1	LOC_Os07g12140	RNA editing factor (POCO)	0.04	OrthoFinder output from all 47 species
LOC_Os07g40750.1	LOC_Os07g40750	Pentatricopeptide repeat-containing protein At4g21705,...	0.03	OrthoFinder output from all 47 species
LOC_Os10g35750.1	LOC_Os10g35750	Pentatricopeptide repeat-containing protein At2g20710,...	0.03	OrthoFinder output from all 47 species
LOC_Os12g07260.1	PPR596, LOC_Os12g07260	RNA editing factor (POCO)	0.2	OrthoFinder output from all 47 species
LOC_Os12g34340.1	LOC_Os12g34340	Pentatricopeptide repeat-containing protein At4g02820,...	0.04	OrthoFinder output from all 47 species
Len_g25974	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g17918	No alias	RNA editing factor *(POCO) & original description: none	0.01	OrthoFinder output from all 47 species
MA_100637g0010	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.03	OrthoFinder output from all 47 species
MA_128872g0020	No alias	Pentatricopeptide repeat-containing protein At1g02150...	0.04	OrthoFinder output from all 47 species
MA_492314g0010	No alias	RNA editing factor (POCO)	0.04	OrthoFinder output from all 47 species
MA_7558g0010	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.13	OrthoFinder output from all 47 species
Smo406783	PPR596	Pentatricopeptide repeat-containing protein At1g80270,...	0.08	OrthoFinder output from all 47 species
Solyc01g079320.4.1	Solyc01g079320	Pentatricopeptide repeat-containing protein At1g02370,...	0.05	OrthoFinder output from all 47 species
Solyc01g100580.3.1	Solyc01g100580	Pentatricopeptide repeat-containing protein At4g01990,...	0.06	OrthoFinder output from all 47 species
Solyc06g005140.3.1	Solyc06g005140	Pentatricopeptide repeat-containing protein At4g02820,...	0.05	OrthoFinder output from all 47 species
Solyc07g063220.4.1	Solyc07g063220	Pentatricopeptide repeat-containing protein At4g21705,...	0.07	OrthoFinder output from all 47 species
Solyc11g006380.2.1	Solyc11g006380	Pentatricopeptide repeat-containing protein At1g60770...	0.17	OrthoFinder output from all 47 species
Solyc12g020050.2.1	PPR596, Solyc12g020050	RNA editing factor (POCO)	0.14	OrthoFinder output from all 47 species
Spa_g11271	No alias	RNA editing factor *(POCO) & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e017396_P001	PPR596, Zm00001e017396	RNA editing factor (POCO)	0.08	OrthoFinder output from all 47 species
Zm00001e025470_P001	PPR596, Zm00001e025470	RNA editing factor (POCO)	0.1	OrthoFinder output from all 47 species
Zm00001e026211_P002	Zm00001e026211	Pentatricopeptide repeat-containing protein At1g02370,...	0.09	OrthoFinder output from all 47 species
Zm00001e036620_P001	Zm00001e036620	Pentatricopeptide repeat-containing protein At1g60770...	0.12	OrthoFinder output from all 47 species
Zm00001e039746_P002	Zm00001e039746	Pentatricopeptide repeat-containing protein At4g02820,...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEP	HCCA
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	IEP	HCCA
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	HCCA
MF	GO:0004152	dihydroorotate dehydrogenase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005742	mitochondrial outer membrane translocase complex	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0010030	positive regulation of seed germination	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016289	CoA hydrolase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018195	peptidyl-arginine modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018216	peptidyl-arginine methylation	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0034969	histone arginine methylation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043985	histone H4-R3 methylation	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097306	cellular response to alcohol	IEP	HCCA
CC	GO:0098799	outer mitochondrial membrane protein complex	IEP	HCCA
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	251	309
IPR002885	Pentatricopeptide_repeat	512	536
IPR002885	Pentatricopeptide_repeat	472	495
IPR002885	Pentatricopeptide_repeat	436	466
IPR002885	Pentatricopeptide_repeat	407	429

External Links

No external refs found!

AT1G80270 (PPR596)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation