AT1G78570 (RHM1, ROL1, ATRHM1)

Aliases : RHM1, ROL1, ATRHM1

Description : rhamnose biosynthesis 1

Gene families : OG0000903 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G78570
Cluster	HCCA: Cluster_128

Target	Alias	Description	ECC score	Gene Family Method
Aev_g03858	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g29693	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g18717	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g03477	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.24G062900.1	RHM1, ROL1,...	UDP-L-rhamnose synthase *(RHM) & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g16757	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g13740	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g19045	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g43230	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g01155	NRS/ER, UER1	dTDP-rhamnose synthase *(NRS-ER) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30896	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g44773	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g50767	No alias	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g05877	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g49046	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e025412_P001	ATRHM2, RHM2,...	Trifunctional UDP-glucose...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009225	nucleotide-sugar metabolic process	ISS	Interproscan
BP	GO:0009226	nucleotide-sugar biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009813	flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010224	response to UV-B	RCA	Interproscan
BP	GO:0010253	UDP-rhamnose biosynthetic process	IDA	Interproscan
BP	GO:0010253	UDP-rhamnose biosynthetic process	IMP	Interproscan
MF	GO:0010280	UDP-L-rhamnose synthase activity	IDA	Interproscan
BP	GO:0010315	auxin export across the plasma membrane	IMP	Interproscan
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010928	regulation of auxin mediated signaling pathway	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0033478	UDP-rhamnose metabolic process	None	Extended
BP	GO:0034285	response to disaccharide	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
MF	GO:0050377	UDP-glucose 4,6-dehydratase activity	IDA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051552	flavone metabolic process	None	Extended
BP	GO:0051553	flavone biosynthetic process	None	Extended
BP	GO:0051554	flavonol metabolic process	None	Extended
BP	GO:0051555	flavonol biosynthetic process	IMP	Interproscan
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140115	export across plasma membrane	None	Extended
BP	GO:0140352	export from cell	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:monoatomic cation symporter activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
BP	GO:0009714	chalcone metabolic process	IEP	HCCA
BP	GO:0009715	chalcone biosynthetic process	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009801	cinnamic acid ester metabolic process	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016210	naringenin-chalcone synthase activity	IEP	HCCA
MF	GO:0016405	CoA-ligase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016688	L-ascorbate peroxidase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0016878	acid-thiol ligase activity	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0042180	cellular ketone metabolic process	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
MF	GO:0045431	flavonol synthase activity	IEP	HCCA
MF	GO:0045486	naringenin 3-dioxygenase activity	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0050284	sinapate 1-glucosyltransferase activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
MF	GO:0052636	arabinosyltransferase activity	IEP	HCCA
MF	GO:0080043	quercetin 3-O-glucosyltransferase activity	IEP	HCCA
MF	GO:0080059	flavonol 3-O-arabinosyltransferase activity	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0120254	olefinic compound metabolic process	IEP	HCCA
BP	GO:0120255	olefinic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016040	NAD(P)-bd_dom	10	315
IPR029903	RmlD-like-bd	386	558

External Links

No external refs found!

AT1G78570 (RHM1, ROL1, ATRHM1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation