AT1G64230 (UBC28)

Aliases : UBC28

Description : ubiquitin-conjugating enzyme 28

Gene families : OG0000200 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000200_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G64230
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00068850	ATUBC11, UBC11,...	Protein degradation.peptide...	0.03	OrthoFinder output from all 47 species
Als_g00339	EMB144, CIN4, COP10, FUS9	component *(COP10) of CDDD substrate adaptor module of...	0.01	OrthoFinder output from all 47 species
Als_g06450	UBC9	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g10989	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.03	OrthoFinder output from all 47 species
Als_g23200	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.04	OrthoFinder output from all 47 species
Als_g39862	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.03	OrthoFinder output from all 47 species
Als_g43928	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g09895	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0032.g024984	UBC10	E2 MUB ubiquitin-conjugating enzyme & original...	0.03	OrthoFinder output from all 47 species
Cba_g01661	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g09626	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g11804	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g19798	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g27631	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g70824	UBC9	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Cre16.g693700	UBC10	Protein degradation.peptide...	0.01	OrthoFinder output from all 47 species
Dac_g21793	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g07349	UBC30	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03167	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01014758001	UBC10	Protein degradation.peptide...	0.02	OrthoFinder output from all 47 species
GSVIVT01024546001	UBC10	Protein degradation.peptide...	0.03	OrthoFinder output from all 47 species
LOC_Os01g46926.1	UBC9, LOC_Os01g46926	conjugation E2 protein	0.02	OrthoFinder output from all 47 species
LOC_Os02g16040.1	UBC10, LOC_Os02g16040	conjugation E2 protein	0.03	OrthoFinder output from all 47 species
Len_g18731	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g23404	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g31742	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.03	OrthoFinder output from all 47 species
Mp5g21800.1	UBC10	conjugation E2 protein	0.02	OrthoFinder output from all 47 species
Mp7g03500.1	EMB144, CIN4, COP10, FUS9	conjugation E2 protein. E2 conjugating component COP10...	0.02	OrthoFinder output from all 47 species
Pir_g41767	UBC10	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g27668	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g14975	No alias	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.02	OrthoFinder output from all 47 species
Smo228916	UBC9	Protein degradation.peptide...	0.02	OrthoFinder output from all 47 species
Solyc06g007510.3.1	UBC10, Solyc06g007510	conjugation E2 protein	0.02	OrthoFinder output from all 47 species
Solyc07g066080.3.1	ATUBC11, UBC11,...	conjugation E2 protein	0.03	OrthoFinder output from all 47 species
Solyc08g081945.1.1	UBC10, Solyc08g081945	conjugation E2 protein	0.03	OrthoFinder output from all 47 species
Spa_g05700	ATUBC11, UBC11	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g45237	UBC9	E2 MUB ubiquitin-conjugating enzyme & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e033719_P001	UBC10, Zm00001e033719	conjugation E2 protein	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001558	regulation of cell growth	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006301	postreplication repair	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IDA	Interproscan
BP	GO:0006511	ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006625	protein targeting to peroxisome	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006635	fatty acid beta-oxidation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007031	peroxisome organization	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009062	fatty acid catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015919	peroxisomal membrane transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016558	protein import into peroxisome matrix	RCA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019395	fatty acid oxidation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0022604	regulation of cell morphogenesis	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0030258	lipid modification	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034440	lipid oxidation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042023	DNA endoreduplication	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043248	proteasome assembly	RCA	Interproscan
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043574	peroxisomal transport	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	RCA	Interproscan
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044743	protein transmembrane import into intracellular organelle	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051510	regulation of unidimensional cell growth	RCA	Interproscan
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0065002	intracellular protein transmembrane transport	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071806	protein transmembrane transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072662	protein localization to peroxisome	None	Extended
BP	GO:0072663	establishment of protein localization to peroxisome	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003868	4-hydroxyphenylpyruvate dioxygenase activity	IEP	HCCA
MF	GO:0003997	acyl-CoA oxidase activity	IEP	HCCA
MF	GO:0004075	biotin carboxylase activity	IEP	HCCA
MF	GO:0004089	carbonate dehydratase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006551	leucine metabolic process	IEP	HCCA
BP	GO:0006552	leucine catabolic process	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
MF	GO:0008824	cyanate hydratase activity	IEP	HCCA
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	HCCA
BP	GO:0009083	branched-chain amino acid catabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009439	cyanate metabolic process	IEP	HCCA
BP	GO:0009440	cyanate catabolic process	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009838	abscission	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0009896	positive regulation of catabolic process	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0009954	proximal/distal pattern formation	IEP	HCCA
BP	GO:0010189	vitamin E biosynthetic process	IEP	HCCA
BP	GO:0010227	floral organ abscission	IEP	HCCA
BP	GO:0010236	plastoquinone biosynthetic process	IEP	HCCA
BP	GO:0010268	brassinosteroid homeostasis	IEP	HCCA
BP	GO:0010506	regulation of autophagy	IEP	HCCA
BP	GO:0010508	positive regulation of autophagy	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010623	programmed cell death involved in cell development	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0015976	carbon utilization	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
BP	GO:0031329	regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	HCCA
CC	GO:0031463	Cul3-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0040020	regulation of meiotic nuclear division	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0042360	vitamin E metabolic process	IEP	HCCA
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0045309	protein phosphorylated amino acid binding	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA
BP	GO:0045787	positive regulation of cell cycle	IEP	HCCA
BP	GO:0045836	positive regulation of meiotic nuclear division	IEP	HCCA
BP	GO:0045927	positive regulation of growth	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046459	short-chain fatty acid metabolic process	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0048102	autophagic cell death	IEP	HCCA
BP	GO:0048657	anther wall tapetum cell differentiation	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
MF	GO:0051015	actin filament binding	IEP	HCCA
BP	GO:0051017	actin filament bundle assembly	IEP	HCCA
MF	GO:0051219	phosphoprotein binding	IEP	HCCA
BP	GO:0051445	regulation of meiotic cell cycle	IEP	HCCA
BP	GO:0051446	positive regulation of meiotic cell cycle	IEP	HCCA
BP	GO:0051783	regulation of nuclear division	IEP	HCCA
BP	GO:0051785	positive regulation of nuclear division	IEP	HCCA
BP	GO:0055088	lipid homeostasis	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0061572	actin filament bundle organization	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
BP	GO:0090068	positive regulation of cell cycle process	IEP	HCCA
BP	GO:0090342	obsolete regulation of cell aging	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000608	UBQ-conjugat_E2	5	141

External Links

No external refs found!

AT1G64230 (UBC28)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation