AT1G63930 (ROH1)

Aliases : ROH1

Description : from the Czech 'roh' meaning 'corner'

Gene families : OG0000221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G63930
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AT1G43630	No alias	Protein of unknown function (DUF793)	0.03	OrthoFinder output from all 47 species
Ala_g28173	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g31938	BPS1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.1Z027800.1	Ceric.1Z027800	not classified & original description: pacid=50597254...	0.03	OrthoFinder output from all 47 species
Ceric.28G046900.1	Ceric.28G046900	not classified & original description: pacid=50570300...	0.02	OrthoFinder output from all 47 species
Solyc08g081520.1.1	ROH1, Solyc08g081520	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Tin_g05526	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e004370_P001	Zm00001e004370	UPF0496 protein 4 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
Zm00001e018455_P001	Zm00001e018455	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010191	mucilage metabolic process	None	Extended
BP	GO:0010192	mucilage biosynthetic process	None	Extended
BP	GO:0010214	seed coat development	IMP	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IMP	Interproscan
BP	GO:0048359	mucilage metabolic process involved in seed coat development	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005938	cell cortex	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009865	pollen tube adhesion	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
CC	GO:0030133	transport vesicle	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0035023	regulation of Rho protein signal transduction	IEP	HCCA
BP	GO:0035024	negative regulation of Rho protein signal transduction	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
CC	GO:0045177	apical part of cell	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0046580	negative regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0048868	pollen tube development	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0051058	negative regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	IEP	HCCA
CC	GO:0070382	exocytic vesicle	IEP	HCCA
BP	GO:0080092	regulation of pollen tube growth	IEP	HCCA
CC	GO:0090406	pollen tube	IEP	HCCA
BP	GO:0098609	cell-cell adhesion	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:0099503	secretory vesicle	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008511	ROH1-like	2	404

External Links

No external refs found!

AT1G63930 (ROH1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation