AT1G61340

Description : F-box family protein

Gene families : OG0001990 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001990_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G61340
Cluster	HCCA: Cluster_60

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00269410	evm_27.TU.AmTr_v1...	No description available	0.05	OrthoFinder output from all 47 species
AT4G05010	No alias	F-box family protein	0.05	OrthoFinder output from all 47 species
Adi_g056531	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Aev_g03765	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Aob_g01260	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Aop_g05457	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Aop_g07740	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Aspi01Gene38775.t1	Aspi01Gene38775	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Aspi01Gene51761.t1	Aspi01Gene51761	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Aspi01Gene57226.t1	Aspi01Gene57226	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Azfi_s0019.g015281	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Cba_g38475	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Dcu_g09432	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Ehy_g00566	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ehy_g13898	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
GSVIVT01003188001	No alias	F-box protein SKIP27 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Gb_00255	No alias	F-box protein At4g35930 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Msp_g42845	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Msp_g44023	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015035	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Solyc10g005480.3.1	Solyc10g005480	F-box protein SKIP27 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
Spa_g06134	No alias	substrate adaptor *(FBS) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Zm00001e010551_P001	Zm00001e010551	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	IEP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009611	response to wounding	IEP	Interproscan
BP	GO:0009617	response to bacterium	IEP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009692	ethylene metabolic process	None	Extended
BP	GO:0009693	ethylene biosynthetic process	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009751	response to salicylic acid	IEP	Interproscan
BP	GO:0009753	response to jasmonic acid	IEP	Interproscan
BP	GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043200	response to amino acid	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043449	cellular alkene metabolic process	None	Extended
BP	GO:0043450	alkene biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:0120254	olefinic compound metabolic process	None	Extended
BP	GO:0120255	olefinic compound biosynthetic process	None	Extended
BP	GO:1900673	olefin metabolic process	None	Extended
BP	GO:1900674	olefin biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004364	glutathione transferase activity	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004623	phospholipase A2 activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005615	extracellular space	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008083	growth factor activity	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009612	response to mechanical stimulus	IEP	HCCA
BP	GO:0009646	response to absence of light	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009873	ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0009969	xyloglucan biosynthetic process	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010411	xyloglucan metabolic process	IEP	HCCA
BP	GO:0010540	basipetal auxin transport	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010583	response to cyclopentenone	IEP	HCCA
BP	GO:0016045	detection of bacterium	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016629	12-oxophytodienoate reductase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
BP	GO:0022622	root system development	IEP	HCCA
MF	GO:0022821	solute:potassium antiporter activity	IEP	HCCA
MF	GO:0030545	signaling receptor regulator activity	IEP	HCCA
MF	GO:0030546	signaling receptor activator activity	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0031407	oxylipin metabolic process	IEP	HCCA
BP	GO:0033037	polysaccharide localization	IEP	HCCA
MF	GO:0033843	xyloglucan 6-xylosyltransferase activity	IEP	HCCA
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0042171	lysophosphatidic acid acyltransferase activity	IEP	HCCA
MF	GO:0042285	xylosyltransferase activity	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA
BP	GO:0046482	para-aminobenzoic acid metabolic process	IEP	HCCA
MF	GO:0048018	receptor ligand activity	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0050688	regulation of defense response to virus	IEP	HCCA
BP	GO:0050691	regulation of defense response to virus by host	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0052542	defense response by callose deposition	IEP	HCCA
BP	GO:0052545	callose localization	IEP	HCCA
BP	GO:0055088	lipid homeostasis	IEP	HCCA
BP	GO:0055089	fatty acid homeostasis	IEP	HCCA
BP	GO:0055090	acylglycerol homeostasis	IEP	HCCA
BP	GO:0055091	phospholipid homeostasis	IEP	HCCA
BP	GO:0070328	triglyceride homeostasis	IEP	HCCA
MF	GO:0071617	lysophospholipid acyltransferase activity	IEP	HCCA
MF	GO:0080043	quercetin 3-O-glucosyltransferase activity	IEP	HCCA
BP	GO:0090333	regulation of stomatal closure	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0098543	detection of other organism	IEP	HCCA
BP	GO:0098581	detection of external biotic stimulus	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G61340

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation