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  5. AT1G58470

AT1G58470 (RBP1, ATRBP1)


Aliases : RBP1, ATRBP1

Description : RNA-binding protein 1


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G58470

Target Alias Description ECC score Gene Family Method Actions
Adi_g041167 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g064547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41899.t1 Aspi01Gene41899 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene47653.t2 Aspi01Gene47653 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65159.t1 Aspi01Gene65159 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72146.t1 Aspi01Gene72146 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre07.g330300 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dde_g02239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07737 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g26283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37554 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc04g077520.3.1 RBP1, ATRBP1,... RNA-binding protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc09g072790.3.1 Solyc09g072790 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Tin_g01925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003727 single-stranded RNA binding IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008283 cell population proliferation TAS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000103 sulfate assimilation IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0005102 signaling receptor binding IEP HCCA
CC GO:0005615 extracellular space IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008083 growth factor activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
MF GO:0009973 adenylyl-sulfate reductase activity IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0022622 root system development IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
MF GO:0030545 signaling receptor regulator activity IEP HCCA
MF GO:0030546 signaling receptor activator activity IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
MF GO:0048018 receptor ligand activity IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048527 lateral root development IEP HCCA
BP GO:0048528 post-embryonic root development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051865 protein autoubiquitination IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0090696 post-embryonic plant organ development IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
BP GO:2000693 positive regulation of seed maturation IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 68
IPR000504 RRM_dom 122 188
No external refs found!