AT1G56110 (NOP56)

Aliases : NOP56

Description : homolog of nucleolar protein NOP56

Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G56110

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00005p00226680	NOP56,...	RNA processing.RNA modification.rRNA/tRNA...	0.08	OrthoFinder output from all 47 species
Adi_g050304	NOP56	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.03	OrthoFinder output from all 47 species
Aev_g27089	NOP56	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.02	OrthoFinder output from all 47 species
Aop_g11428	No alias	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.06	OrthoFinder output from all 47 species
Aspi01Gene34301.t1	NOP56, Aspi01Gene34301	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.04	OrthoFinder output from all 47 species
Azfi_s0061.g034932	No alias	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.03	OrthoFinder output from all 47 species
Cba_g57048	No alias	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.02	OrthoFinder output from all 47 species
Cba_g77651	No alias	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001073.20	NOP56	RNA processing.RNA modification.rRNA/tRNA...	0.07	OrthoFinder output from all 47 species
Cre12.g525200	NOP56	RNA processing.RNA modification.rRNA/tRNA...	0.07	OrthoFinder output from all 47 species
Dac_g14259	NOP56	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.03	OrthoFinder output from all 47 species
Ehy_g06884	NOP56	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.05	OrthoFinder output from all 47 species
GSVIVT01008506001	NOP56	RNA processing.RNA modification.rRNA/tRNA...	0.24	OrthoFinder output from all 47 species
Gb_05243	NOP56	snoRNP scaffold component Nop56 of snoRNP rRNA...	0.14	OrthoFinder output from all 47 species
LOC_Os03g22880.1	NOP56, LOC_Os03g22880	snoRNP scaffold component Nop56 of snoRNP rRNA...	0.13	OrthoFinder output from all 47 species
Lfl_g03084	NOP56	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.04	OrthoFinder output from all 47 species
MA_10434077g0010	NOP56	snoRNP scaffold component Nop56 of snoRNP rRNA...	0.12	OrthoFinder output from all 47 species
MA_9961528g0010	NOP56	Probable nucleolar protein 5-1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Mp2g23840.1	NOP56	snoRNP scaffold component Nop56 of snoRNP rRNA...	0.14	OrthoFinder output from all 47 species
Msp_g11664	NOP56	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.07	OrthoFinder output from all 47 species
Nbi_g26532	No alias	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.04	OrthoFinder output from all 47 species
Ore_g37588	NOP56	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.06	OrthoFinder output from all 47 species
Pp3c16_5220V3.1	NOP56, Pp3c16_5220	homolog of nucleolar protein NOP56	0.04	OrthoFinder output from all 47 species
Ppi_g47632	No alias	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017374	NOP56	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.03	OrthoFinder output from all 47 species
Sam_g10672	No alias	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.07	OrthoFinder output from all 47 species
Smo167367	NOP56	RNA processing.RNA modification.rRNA/tRNA...	0.1	OrthoFinder output from all 47 species
Solyc01g100570.4.1	NOP56, Solyc01g100570	snoRNP scaffold component Nop56 of snoRNP rRNA...	0.15	OrthoFinder output from all 47 species
Spa_g48006	NOP56	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.05	OrthoFinder output from all 47 species
Tin_g03400	No alias	scaffold component *(Nop56) of snoRNP rRNA methylation...	0.04	OrthoFinder output from all 47 species
Zm00001e001676_P001	NOP56, Zm00001e001676	snoRNP scaffold component Nop56 of snoRNP rRNA...	0.09	OrthoFinder output from all 47 species
Zm00001e038196_P002	NOP56, Zm00001e038196	snoRNP scaffold component Nop56 of snoRNP rRNA...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048444	floral organ morphogenesis	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0080056	petal vascular tissue pattern formation	IEP	HCCA
BP	GO:0080057	sepal vascular tissue pattern formation	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097306	cellular response to alcohol	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002687	Nop_dom	177	409
IPR012974	NOP58/56_N	4	69

External Links

No external refs found!

AT1G56110 (NOP56)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation