AT1G55250 (HUB2)

Aliases : HUB2

Description : histone mono-ubiquitination 2

Gene families : OG0001584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001584_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G55250

Target	Alias	Description	ECC score	Gene Family Method
Adi_g059356	RDO4, HUB1	E3 ubiquitin ligase *(HUB) & original description: none	0.07	OrthoFinder output from all 47 species
Adi_g088508	RDO4, HUB1	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g104742	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g20568	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02632	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g01150	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16567	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g02332	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09718	RDO4, HUB1	E3 ubiquitin ligase *(HUB) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0079.g038425	HUB2	E3 ubiquitin ligase *(HUB) & original description: CDS=1-2559	0.04	OrthoFinder output from all 47 species
Cba_g10519	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g32079	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.14G031800.1	RDO4, HUB1,...	E3 ubiquitin ligase *(HUB) & original description:...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000169.18	HUB2	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Dcu_g04023	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g04109	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.08	OrthoFinder output from all 47 species
GSVIVT01018223001	RDO4, HUB1	Protein degradation.peptide tagging.Ubiquitin...	0.09	OrthoFinder output from all 47 species
LOC_Os04g46450.1	RDO4, HUB1,...	RING-HC-class E3 ligase	0.02	OrthoFinder output from all 47 species
Len_g08188	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g12516	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g11288	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g26973	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10430809g0020	HUB2	RING-HC-class E3 ligase	0.08	OrthoFinder output from all 47 species
MA_164157g0010	HUB2	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp6g03540.1	RDO4, HUB1	RING-HC-class E3 ligase	0.02	OrthoFinder output from all 47 species
Msp_g06195	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g05448	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g35898	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g10428	RDO4, HUB1	E3 ubiquitin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g01320	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g07599	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g12359	No alias	E3 ubiquitin ligase *(HUB) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g35279	No alias	E3 ubiquitin ligase *(HUB) & original description: none	0.04	OrthoFinder output from all 47 species
Smo175555	HUB2	Protein degradation.peptide tagging.Ubiquitin...	0.05	OrthoFinder output from all 47 species
Solyc01g006040.3.1	HUB2, Solyc01g006040	RING-HC-class E3 ligase	0.03	OrthoFinder output from all 47 species
Spa_g08099	HUB2	E3 ubiquitin ligase *(HUB) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g06090	HUB2	E3 ubiquiTin ligase *(HUB) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g15227	RDO4, HUB1	E3 ubiquiTin ligase *(HUB) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013143_P005	RDO4, HUB1,...	RING-HC-class E3 ligase	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006513	protein monoubiquitination	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	IMP	Interproscan
BP	GO:0010162	seed dormancy process	IMP	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IMP	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010390	histone monoubiquitination	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016574	histone ubiquitination	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033523	histone H2B ubiquitination	IMP	Interproscan
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IPI	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
CC	GO:0000785	chromatin	IEP	HCCA
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0002213	defense response to insect	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
CC	GO:0008278	cohesin complex	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009845	seed germination	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010332	response to gamma radiation	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016233	telomere capping	IEP	HCCA
CC	GO:0016363	nuclear matrix	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
CC	GO:0030870	Mre11 complex	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0032504	multicellular organism reproduction	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048645	animal organ formation	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
MF	GO:0070063	RNA polymerase binding	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G55250 (HUB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation