AT1G53500 (ATRHM2, RHM2, ATMUM4, MUM4)

Aliases : ATRHM2, RHM2, ATMUM4, MUM4

Description : NAD-dependent epimerase/dehydratase family protein

Gene families : OG0000903 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G53500

Target	Alias	Description	ECC score	Gene Family Method
Aev_g13357	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g02950	NRS/ER, UER1	dTDP-rhamnose synthase *(NRS-ER) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g14366	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g13825	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g25968	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.13G016100.1	NRS/ER, UER1,...	dTDP-rhamnose synthase *(NRS-ER) & original description:...	0.06	OrthoFinder output from all 47 species
Cre09.g387171	NRS/ER, UER1	Carbohydrate metabolism.nucleotide sugar...	0.02	OrthoFinder output from all 47 species
Dcu_g13740	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01014091001	ATRHM3, RHM3	Carbohydrate metabolism.nucleotide sugar...	0.05	OrthoFinder output from all 47 species
Gb_07837	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase	0.03	OrthoFinder output from all 47 species
Len_g10910	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.04	OrthoFinder output from all 47 species
Mp1g04880.1	NRS/ER, UER1	UDP-L-rhamnose synthase	0.04	OrthoFinder output from all 47 species
Nbi_g09975	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.07	OrthoFinder output from all 47 species
Nbi_g12352	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g09373	NRS/ER, UER1	dTDP-rhamnose synthase *(NRS-ER) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g07572	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g10663	NRS/ER, UER1	dTDP-rhamnose synthase *(NRS-ER) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005330	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description:...	0.05	OrthoFinder output from all 47 species
Sam_g10633	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo266803	RHM1, ROL1, ATRHM1	Carbohydrate metabolism.nucleotide sugar...	0.03	OrthoFinder output from all 47 species
Solyc08g069110.3.1	RHM1, ROL1,...	UDP-L-rhamnose synthase	0.06	OrthoFinder output from all 47 species
Spa_g24187	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g53598	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e001242_P002	RHM1, ROL1,...	UDP-L-rhamnose synthase	0.1	OrthoFinder output from all 47 species
Zm00001e015435_P001	NRS/ER, UER1,...	UDP-L-rhamnose synthase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009225	nucleotide-sugar metabolic process	None	Extended
BP	GO:0009226	nucleotide-sugar biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010191	mucilage metabolic process	None	Extended
BP	GO:0010192	mucilage biosynthetic process	IMP	Interproscan
BP	GO:0010214	seed coat development	IMP	Interproscan
BP	GO:0010253	UDP-rhamnose biosynthetic process	IDA	Interproscan
MF	GO:0010280	UDP-L-rhamnose synthase activity	IDA	Interproscan
MF	GO:0010280	UDP-L-rhamnose synthase activity	ISS	Interproscan
MF	GO:0010489	UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity	TAS	Interproscan
MF	GO:0010490	UDP-4-keto-rhamnose-4-keto-reductase activity	TAS	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016854	racemase and epimerase activity	None	Extended
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033478	UDP-rhamnose metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
MF	GO:0050377	UDP-glucose 4,6-dehydratase activity	IDA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004707	MAP kinase activity	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
MF	GO:0015662	P-type ion transporter activity	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0140358	P-type transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR029903	RmlD-like-bd	384	556
IPR016040	NAD(P)-bd_dom	12	317

External Links

No external refs found!

AT1G53500 (ATRHM2, RHM2, ATMUM4, MUM4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation