AT1G53230 (TCP3)

Aliases : TCP3

Description : TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G53230

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00041830	TCP10,...	RNA biosynthesis.transcriptional activation.TCP...	0.05	OrthoFinder output from all 47 species
AT3G02150	TCP13, TFPD, PTF1	plastid transcription factor 1	0.01	OrthoFinder output from all 47 species
AT5G08070	TCP17	TCP domain protein 17	0.02	OrthoFinder output from all 47 species
Aev_g07355	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g07745	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g18510	ATTCP24, TCP24	TCP-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g07553	TCP3	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene02912.t1	ATTCP24, TCP24,...	TCP-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene02917.t2	TCP3, Aspi01Gene02917	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene02926.t1	TCP3, Aspi01Gene02926	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene48962.t1	TCP13, TFPD,...	TCP-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene50266.t1	TCP2, Aspi01Gene50266	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene64947.t1	TCP3, Aspi01Gene64947	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.01G003200.1	TCP3, Ceric.01G003200	TCP-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g11506	ATTCP24, TCP24	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07892	TCP3	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011962001	TCP12, BRC2	RNA biosynthesis.transcriptional activation.TCP...	0.07	OrthoFinder output from all 47 species
Gb_30049	TCP2	transcription factor (TCP)	0.01	OrthoFinder output from all 47 species
Gb_35810	TCP2	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Gb_37187	TCP3	transcription factor (TCP)	0.05	OrthoFinder output from all 47 species
Gb_38376	TCP2	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Gb_38377	TCP2	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Len_g03300	TCP2	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_101752g0020	ATTCP24, TCP24	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
MA_52440g0010	TCP4, MEE35	transcription factor (TCP)	0.04	OrthoFinder output from all 47 species
Pnu_g26727	TCP13, TFPD, PTF1	TCP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Smo89227	TCP2	RNA biosynthesis.transcriptional activation.TCP...	0.03	OrthoFinder output from all 47 species
Solyc03g115010.3.1	TCP5, Solyc03g115010	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Solyc04g006980.1.1	TCP12, BRC2,...	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Solyc05g009900.3.1	TCP12, BRC2,...	transcription factor (TCP)	0.01	OrthoFinder output from all 47 species
Solyc06g069460.3.1	TCP5, Solyc06g069460	transcription factor (TCP)	0.04	OrthoFinder output from all 47 species
Solyc12g014140.3.1	TCP4, MEE35,...	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Tin_g03446	TCP3	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e019734_P001	TCP5, Zm00001e019734	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009668	plastid membrane organization	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	IGI	Interproscan
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010027	thylakoid membrane organization	RCA	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016226	iron-sulfur cluster assembly	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030154	cell differentiation	IGI	Interproscan
BP	GO:0030154	cell differentiation	RCA	Interproscan
BP	GO:0031163	metallo-sulfur cluster assembly	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0040034	regulation of development, heterochronic	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045962	positive regulation of development, heterochronic	IGI	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048366	leaf development	IGI	Interproscan
BP	GO:0048366	leaf development	TAS	Interproscan
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0008285	negative regulation of cell population proliferation	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017887	TF_TCP_subgr	47	158

External Links

No external refs found!

AT1G53230 (TCP3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation