AT1G25440

Description : B-box type zinc finger protein with CCT domain

Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G25440

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00073p00061640	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
Adi_g021795	No alias	CMF transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g05448	No alias	CMF transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g01431	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g04399	No alias	CMF transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g13738	No alias	CMF transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g30657	No alias	CMF transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g13442	No alias	CMF transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cre15.g635100	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g12836	No alias	BBX class-III transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01010855001	CIA2	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
GSVIVT01011897001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
GSVIVT01024661001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
LOC_Os03g50310.1	LOC_Os03g50310	transcription factor (BBX-CO)	0.09	OrthoFinder output from all 47 species
Len_g23704	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g31511	No alias	CMF transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g06124	No alias	CMF transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
MA_10192193g0020	No alias	transcription factor (BBX-CO)	0.05	OrthoFinder output from all 47 species
Nbi_g14113	No alias	BBX class-III transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g16447	No alias	CMF transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g19039	No alias	BBX class-III transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17788	No alias	CMF transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g60427	No alias	BBX class-III transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g34850	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g007210.3.1	Solyc04g007210	transcription factor (BBX-CO)	0.05	OrthoFinder output from all 47 species
Solyc05g009310.3.1	Solyc05g009310	transcription factor (BBX-CO)	0.05	OrthoFinder output from all 47 species
Spa_g04603	No alias	CMF transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e012194_P001	Zm00001e012194	transcription factor (BBX-CO)	0.03	OrthoFinder output from all 47 species
Zm00001e015732_P002	Zm00001e015732	transcription factor (BBX-CO)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0000293	ferric-chelate reductase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0005982	starch metabolic process	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016108	tetraterpenoid metabolic process	IEP	HCCA
BP	GO:0016109	tetraterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016116	carotenoid metabolic process	IEP	HCCA
BP	GO:0016117	carotenoid biosynthetic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016722	oxidoreductase activity, acting on metal ions	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
BP	GO:0019252	starch biosynthetic process	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0080005	photosystem stoichiometry adjustment	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	14	57
IPR010402	CCT_domain	361	403

External Links

No external refs found!

AT1G25440

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation