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  5. AT1G14420

AT1G14420 (AT59)


Aliases : AT59

Description : Pectate lyase family protein


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G14420
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.17 OrthoFinder output from all 47 species
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.15 OrthoFinder output from all 47 species
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AT1G67750 No alias Pectate lyase family protein 0.03 OrthoFinder output from all 47 species
AT3G07010 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G24670 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G54920 PMR6 Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G09280 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G48900 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g27583 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21580 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011291 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=272-1573 0.02 OrthoFinder output from all 47 species
Azfi_s0123.g048430 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=163-1392 0.03 OrthoFinder output from all 47 species
Ceric.22G068000.1 Ceric.22G068000 EC_4.2 carbon-oxygen lyase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.30G051100.1 RHS14, Ceric.30G051100 EC_4.2 carbon-oxygen lyase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.30G051200.1 RHS14, Ceric.30G051200 EC_4.2 carbon-oxygen lyase & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43847 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03524 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05863 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15970 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.12 OrthoFinder output from all 47 species
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.11 OrthoFinder output from all 47 species
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 OrthoFinder output from all 47 species
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.16 OrthoFinder output from all 47 species
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.16 OrthoFinder output from all 47 species
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
Gb_02248 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
LOC_Os02g12300.1 AT59, LOC_Os02g12300 pectate lyase 0.09 OrthoFinder output from all 47 species
LOC_Os04g05050.1 LOC_Os04g05050 pectate lyase 0.03 OrthoFinder output from all 47 species
LOC_Os06g05209.1 LOC_Os06g05209 pectate lyase 0.16 OrthoFinder output from all 47 species
LOC_Os06g05260.1 LOC_Os06g05260 pectate lyase 0.16 OrthoFinder output from all 47 species
LOC_Os06g38510.2 LOC_Os06g38510 pectate lyase 0.07 OrthoFinder output from all 47 species
Len_g13639 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g50589 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
MA_10428603g0020 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10437227g0030 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_1164682g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_474372g0010 No alias pectate lyase 0.01 OrthoFinder output from all 47 species
Ore_g26214 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26215 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41164 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g03086 RHS14 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11165 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16922 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g010740.4.1 AT59, Solyc01g010740 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc02g031960.3.1 Solyc02g031960 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc02g087670.3.1 Solyc02g087670 pectate lyase 0.06 OrthoFinder output from all 47 species
Solyc02g093580.4.1 Solyc02g093580 pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc03g058890.4.1 AT59, Solyc03g058890 pectate lyase 0.16 OrthoFinder output from all 47 species
Solyc03g058910.3.1 AT59, Solyc03g058910 pectate lyase 0.11 OrthoFinder output from all 47 species
Solyc03g113150.3.1 AT59, Solyc03g113150 pectate lyase 0.06 OrthoFinder output from all 47 species
Solyc05g007080.4.1 AT59, Solyc05g007080 pectate lyase 0.17 OrthoFinder output from all 47 species
Solyc06g071020.3.1 Solyc06g071020 pectate lyase 0.09 OrthoFinder output from all 47 species
Solyc06g083580.4.1 Solyc06g083580 pectate lyase 0.03 OrthoFinder output from all 47 species
Spa_g40115 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g57258 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07683 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07726 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024959_P001 AT59, Zm00001e024959 pectate lyase 0.1 OrthoFinder output from all 47 species
Zm00001e037311_P001 Zm00001e037311 pectate lyase 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0009664 plant-type cell wall organization TAS Interproscan
BP GO:0009827 plant-type cell wall modification RCA Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0001558 regulation of cell growth IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0005451 obsolete monoatomic cation:proton antiporter activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006862 nucleotide transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009789 positive regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0009967 positive regulation of signal transduction IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0010647 positive regulation of cell communication IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
BP GO:0010942 positive regulation of cell death IEP HCCA
BP GO:0010959 regulation of metal ion transport IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
BP GO:0015802 basic amino acid transport IEP HCCA
BP GO:0016049 cell growth IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022603 regulation of anatomical structure morphogenesis IEP HCCA
BP GO:0022604 regulation of cell morphogenesis IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0023056 positive regulation of signaling IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
CC GO:0030427 site of polarized growth IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0035725 sodium ion transmembrane transport IEP HCCA
CC GO:0035838 growing cell tip IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042330 taxis IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0043068 positive regulation of programmed cell death IEP HCCA
BP GO:0043266 regulation of potassium ion transport IEP HCCA
BP GO:0043269 regulation of monoatomic ion transport IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
MF GO:0051139 metal cation:proton antiporter activity IEP HCCA
CC GO:0051286 cell tip IEP HCCA
BP GO:0051510 regulation of unidimensional cell growth IEP HCCA
CC GO:0060187 cell pole IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0080092 regulation of pollen tube growth IEP HCCA
CC GO:0090404 pollen tube tip IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140828 metal cation:monoatomic cation antiporter activity IEP HCCA
BP GO:1901016 regulation of potassium ion transmembrane transporter activity IEP HCCA
BP GO:1901379 regulation of potassium ion transmembrane transport IEP HCCA
BP GO:1901979 regulation of inward rectifier potassium channel activity IEP HCCA
BP GO:2001257 regulation of cation channel activity IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 186 370
IPR007524 Pec_lyase_N 30 85
No external refs found!