AT1G05230 (HDG2)

Aliases : HDG2

Description : homeodomain GLABROUS 2

Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G05230

Target	Alias	Description	ECC score	Gene Family Method
AT1G73360	EDT1, HDG11, ATHDG11	homeodomain GLABROUS 11	0.04	OrthoFinder output from all 47 species
AT1G79840	GL2	HD-ZIP IV family of homeobox-leucine zipper protein with...	0.02	OrthoFinder output from all 47 species
Adi_g038981	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g110417	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g117416	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g05481	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g05536	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06757	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g14063	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Aev_g18649	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g15179	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g23646	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g25555	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g23932 Als_g05720	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g07199	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g27191	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g53005	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g62966	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g08452	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07013	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09754	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14038	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g21768	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene64351.t1	PDF2, Aspi01Gene64351	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0038.g026173	PDF2	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0100.g044331	PDF2	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0131.g049156	PDF2	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s2071.g108976	PDF2	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Cba_g01321	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g06562	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g14579	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g67903	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g70526	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.18G081600.1	ATML1, Ceric.18G081600	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.29G064400.1	ATML1, Ceric.29G064400	HD-ZIP IV-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Dac_g03815	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g07731	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g08292	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g11376	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.1	OrthoFinder output from all 47 species
Dcu_g20177	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g25466	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g39944	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g05023	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g06153	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01001986001	HDG2	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
GSVIVT01001987001	HDG2	Homeobox-leucine zipper protein ROC7 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
GSVIVT01027508001	ANL2, AHDP	RNA biosynthesis.transcriptional activation.HB...	0.11	OrthoFinder output from all 47 species
Gb_05082	PDF2	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Gb_18862	PDF2	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
LOC_Os04g53540.3	PDF2, LOC_Os04g53540	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
LOC_Os06g10600.1	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
LOC_Os08g04190.1	PDF2, LOC_Os08g04190	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
LOC_Os08g08820.2	PDF2, LOC_Os08g08820	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
LOC_Os09g35760.1	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.06	OrthoFinder output from all 47 species
LOC_Os10g42490.1	HDG5, HB-7,...	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
Len_g01380	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Len_g01889	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g03368	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.17	OrthoFinder output from all 47 species
Len_g11571	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Len_g14714	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g20437	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g46600	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g09406	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g40594	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10318273g0010	HDG2	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
MA_10374232g0010	PDF2	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
MA_110607g0010	PDF2	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
MA_122121g0010	PDF2	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
MA_16767g0010	PDF2	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
MA_17048g0010	HDG5, HB-7	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
MA_38472g0010	HDG1, HD-GL2-1	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
MA_483958g0010	ATML1	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
MA_8859629g0010	PDF2	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
MA_93471g0010	ANL2, AHDP	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
Mp7g09710.1	ATML1	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
Msp_g14857	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Msp_g25796	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Nbi_g02391	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g13220	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g13845	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Nbi_g34190	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g11149	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g19174	EDT1, HDG11, ATHDG11	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g37968	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g11364	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g11487	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g05300	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g08965	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17562	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g63496	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001922	ATML1	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013927	PDF2	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Solyc01g091630.3.1	ANL2, AHDP,...	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Solyc03g098200.4.1	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.07	OrthoFinder output from all 47 species
Solyc03g120620.3.1	GL2, Solyc03g120620	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
Solyc06g072310.3.1	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.06	OrthoFinder output from all 47 species
Spa_g06195	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g07168	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g09419	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g16174	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g46298	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g47125	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g51145	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g52321	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g01261	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g11470	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g13777	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g14207	ANL2, AHDP	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g31372	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Tin_g45820	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e002453_P001	HDG5, HB-7,...	transcription factor (HD-ZIP IV)	0.06	OrthoFinder output from all 47 species
Zm00001e006870_P004	HDG2, Zm00001e006870	transcription factor (HD-ZIP IV)	0.15	OrthoFinder output from all 47 species
Zm00001e015997_P002	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.1	OrthoFinder output from all 47 species
Zm00001e017088_P001	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Zm00001e021649_P002	PDF2, Zm00001e021649	transcription factor (HD-ZIP IV)	0.06	OrthoFinder output from all 47 species
Zm00001e023786_P003	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.06	OrthoFinder output from all 47 species
Zm00001e034755_P001	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.07	OrthoFinder output from all 47 species
Zm00001e036212_P002	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.08	OrthoFinder output from all 47 species
Zm00001e039947_P001	HDG2, Zm00001e039947	transcription factor (HD-ZIP IV)	0.12	OrthoFinder output from all 47 species
Zm00001e041695_P001	PDF2, Zm00001e041695	transcription factor (HD-ZIP IV)	0.21	OrthoFinder output from all 47 species
Zm00001e042218_P002	HDG2, Zm00001e042218	transcription factor (HD-ZIP IV)	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010090	trichome morphogenesis	IMP	Interproscan
BP	GO:0010103	stomatal complex morphogenesis	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045596	negative regulation of cell differentiation	None	Extended
BP	GO:0048497	maintenance of floral organ identity	IGI	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090626	plant epidermis morphogenesis	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
BP	GO:0090700	maintenance of plant organ identity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009737	response to abscisic acid	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:0097305	response to alcohol	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	65	120
IPR002913	START_lipid-bd_dom	252	465

External Links

No external refs found!

AT1G05230 (HDG2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation