AT1G04940 (TIC20)

Aliases : TIC20

Description : translocon at the inner envelope membrane of chloroplasts 20

Gene families : OG0005319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005319_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G04940
Cluster	HCCA: Cluster_38

Target	Alias	Description	ECC score	Gene Family Method
Adi_g050694	TIC20	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.04	OrthoFinder output from all 47 species
Aev_g04496	TIC20	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.03	OrthoFinder output from all 47 species
Als_g04203	TIC20	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.05	OrthoFinder output from all 47 species
Aspi01Gene07138.t1	TIC20, Aspi01Gene07138	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.02	OrthoFinder output from all 47 species
Ceric.01G050900.1	TIC20, Ceric.01G050900	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.07	OrthoFinder output from all 47 species
Cre08.g379650	TIC20	Protein translocation.chloroplast.inner envelope TIC...	0.02	OrthoFinder output from all 47 species
GSVIVT01009769001	TIC20	Protein translocation.chloroplast.inner envelope TIC...	0.11	OrthoFinder output from all 47 species
LOC_Os07g38110.1	LOC_Os07g38110	component Tic20-I/IV of inner envelope TIC-20 complex	0.08	OrthoFinder output from all 47 species
Lfl_g02724	TIC20	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.03	OrthoFinder output from all 47 species
Mp3g05820.1	TIC20	component Tic20-I/IV of inner envelope TIC-20 complex	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012041	TIC20	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.03	OrthoFinder output from all 47 species
Sam_g19789	No alias	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.02	OrthoFinder output from all 47 species
Solyc05g054720.3.1	TIC20, Solyc05g054720	component Tic20-I/IV of inner envelope TIC-20 complex	0.03	OrthoFinder output from all 47 species
Spa_g06282	TIC20	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.03	OrthoFinder output from all 47 species
Spa_g29705	TIC20	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.03	OrthoFinder output from all 47 species
Tin_g00352	TIC20	component *(Tic20-I/IV) of inner envelope TIC-20 complex...	0.04	OrthoFinder output from all 47 species
Zm00001e035290_P002	TIC20, Zm00001e035290	component Tic20-I/IV of inner envelope TIC-20 complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006626	protein targeting to mitochondrion	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006839	mitochondrial transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008565	obsolete protein transporter activity	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009528	plastid inner membrane	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009706	chloroplast inner membrane	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	ISS	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0019866	organelle inner membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031969	chloroplast membrane	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0045036	protein targeting to chloroplast	None	Extended
BP	GO:0045037	protein import into chloroplast stroma	IDA	Interproscan
BP	GO:0045037	protein import into chloroplast stroma	IMP	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0065002	intracellular protein transmembrane transport	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0070585	protein localization to mitochondrion	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071806	protein transmembrane transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072596	establishment of protein localization to chloroplast	None	Extended
BP	GO:0072598	protein localization to chloroplast	None	Extended
BP	GO:0072655	establishment of protein localization to mitochondrion	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000095	S-adenosyl-L-methionine transmembrane transporter activity	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
CC	GO:0009535	chloroplast thylakoid membrane	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0009668	plastid membrane organization	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
BP	GO:0010027	thylakoid membrane organization	IEP	HCCA
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0015695	organic cation transport	IEP	HCCA
BP	GO:0015805	S-adenosyl-L-methionine transport	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
CC	GO:0055035	plastid thylakoid membrane	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0072348	sulfur compound transport	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005691	Tic20	94	267

External Links

No external refs found!

AT1G04940 (TIC20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation