| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003727 | single-stranded RNA binding | IEP | HCCA |
| MF | GO:0003913 | DNA photolyase activity | IEP | HCCA |
| MF | GO:0004418 | hydroxymethylbilane synthase activity | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0006098 | pentose-phosphate shunt | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006458 | 'de novo' protein folding | IEP | HCCA |
| BP | GO:0006629 | lipid metabolic process | IEP | HCCA |
| BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
| BP | GO:0006650 | glycerophospholipid metabolic process | IEP | HCCA |
| BP | GO:0006655 | phosphatidylglycerol biosynthetic process | IEP | HCCA |
| BP | GO:0006720 | isoprenoid metabolic process | IEP | HCCA |
| BP | GO:0006721 | terpenoid metabolic process | IEP | HCCA |
| BP | GO:0006739 | NADP metabolic process | IEP | HCCA |
| BP | GO:0006740 | NADPH regeneration | IEP | HCCA |
| BP | GO:0006743 | ubiquinone metabolic process | IEP | HCCA |
| BP | GO:0006744 | ubiquinone biosynthetic process | IEP | HCCA |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006950 | response to stress | IEP | HCCA |
| BP | GO:0006952 | defense response | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| MF | GO:0008187 | poly-pyrimidine tract binding | IEP | HCCA |
| BP | GO:0008219 | cell death | IEP | HCCA |
| MF | GO:0008266 | poly(U) RNA binding | IEP | HCCA |
| BP | GO:0008299 | isoprenoid biosynthetic process | IEP | HCCA |
| BP | GO:0008610 | lipid biosynthetic process | IEP | HCCA |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009266 | response to temperature stimulus | IEP | HCCA |
| CC | GO:0009368 | endopeptidase Clp complex | IEP | HCCA |
| BP | GO:0009409 | response to cold | IEP | HCCA |
| CC | GO:0009526 | plastid envelope | IEP | HCCA |
| CC | GO:0009535 | chloroplast thylakoid membrane | IEP | HCCA |
| CC | GO:0009579 | thylakoid | IEP | HCCA |
| BP | GO:0009605 | response to external stimulus | IEP | HCCA |
| BP | GO:0009607 | response to biotic stimulus | IEP | HCCA |
| BP | GO:0009617 | response to bacterium | IEP | HCCA |
| BP | GO:0009628 | response to abiotic stimulus | IEP | HCCA |
| BP | GO:0009657 | plastid organization | IEP | HCCA |
| BP | GO:0009658 | chloroplast organization | IEP | HCCA |
| BP | GO:0009668 | plastid membrane organization | IEP | HCCA |
| BP | GO:0009696 | salicylic acid metabolic process | IEP | HCCA |
| BP | GO:0009697 | salicylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0009767 | photosynthetic electron transport chain | IEP | HCCA |
| BP | GO:0009773 | photosynthetic electron transport in photosystem I | IEP | HCCA |
| CC | GO:0009840 | chloroplastic endopeptidase Clp complex | IEP | HCCA |
| BP | GO:0009902 | chloroplast relocation | IEP | HCCA |
| CC | GO:0009941 | chloroplast envelope | IEP | HCCA |
| BP | GO:0010027 | thylakoid membrane organization | IEP | HCCA |
| BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
| BP | GO:0010267 | ta-siRNA processing | IEP | HCCA |
| CC | GO:0010319 | stromule | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| BP | GO:0016108 | tetraterpenoid metabolic process | IEP | HCCA |
| BP | GO:0016109 | tetraterpenoid biosynthetic process | IEP | HCCA |
| BP | GO:0016114 | terpenoid biosynthetic process | IEP | HCCA |
| BP | GO:0016116 | carotenoid metabolic process | IEP | HCCA |
| BP | GO:0016117 | carotenoid biosynthetic process | IEP | HCCA |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | HCCA |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| MF | GO:0016869 | intramolecular transferase activity, transferring amino groups | IEP | HCCA |
| BP | GO:0018958 | phenol-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019220 | regulation of phosphate metabolic process | IEP | HCCA |
| BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | HCCA |
| BP | GO:0019362 | pyridine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | HCCA |
| BP | GO:0019684 | photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0019750 | chloroplast localization | IEP | HCCA |
| CC | GO:0019867 | outer membrane | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0022900 | electron transport chain | IEP | HCCA |
| CC | GO:0031090 | organelle membrane | IEP | HCCA |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | HCCA |
| BP | GO:0031399 | regulation of protein modification process | IEP | HCCA |
| CC | GO:0031967 | organelle envelope | IEP | HCCA |
| CC | GO:0031968 | organelle outer membrane | IEP | HCCA |
| CC | GO:0031975 | envelope | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| CC | GO:0034357 | photosynthetic membrane | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0035303 | regulation of dephosphorylation | IEP | HCCA |
| BP | GO:0035304 | regulation of protein dephosphorylation | IEP | HCCA |
| BP | GO:0040034 | regulation of development, heterochronic | IEP | HCCA |
| CC | GO:0042170 | plastid membrane | IEP | HCCA |
| BP | GO:0042181 | ketone biosynthetic process | IEP | HCCA |
| MF | GO:0042286 | glutamate-1-semialdehyde 2,1-aminomutase activity | IEP | HCCA |
| BP | GO:0042537 | benzene-containing compound metabolic process | IEP | HCCA |
| CC | GO:0042651 | thylakoid membrane | IEP | HCCA |
| BP | GO:0042742 | defense response to bacterium | IEP | HCCA |
| BP | GO:0042793 | plastid transcription | IEP | HCCA |
| BP | GO:0043207 | response to external biotic stimulus | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
| BP | GO:0044419 | biological process involved in interspecies interaction between organisms | IEP | HCCA |
| BP | GO:0045017 | glycerolipid biosynthetic process | IEP | HCCA |
| BP | GO:0046189 | phenol-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0046471 | phosphatidylglycerol metabolic process | IEP | HCCA |
| BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | HCCA |
| BP | GO:0046486 | glycerolipid metabolic process | IEP | HCCA |
| BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | HCCA |
| BP | GO:0046496 | nicotinamide nucleotide metabolic process | IEP | HCCA |
| BP | GO:0048506 | regulation of timing of meristematic phase transition | IEP | HCCA |
| BP | GO:0048509 | regulation of meristem development | IEP | HCCA |
| BP | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | IEP | HCCA |
| BP | GO:0051084 | 'de novo' post-translational protein folding | IEP | HCCA |
| BP | GO:0051085 | chaperone cofactor-dependent protein refolding | IEP | HCCA |
| BP | GO:0051156 | glucose 6-phosphate metabolic process | IEP | HCCA |
| BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | HCCA |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | HCCA |
| BP | GO:0051604 | protein maturation | IEP | HCCA |
| BP | GO:0051640 | organelle localization | IEP | HCCA |
| BP | GO:0051644 | plastid localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0051656 | establishment of organelle localization | IEP | HCCA |
| BP | GO:0051667 | establishment of plastid localization | IEP | HCCA |
| BP | GO:0051707 | response to other organism | IEP | HCCA |
| CC | GO:0055035 | plastid thylakoid membrane | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| BP | GO:0061024 | membrane organization | IEP | HCCA |
| BP | GO:0061077 | chaperone-mediated protein folding | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072524 | pyridine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:0098542 | defense response to other organism | IEP | HCCA |
| CC | GO:0098588 | bounding membrane of organelle | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | HCCA |
| BP | GO:1901661 | quinone metabolic process | IEP | HCCA |
| BP | GO:1901663 | quinone biosynthetic process | IEP | HCCA |