1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G01320

AT1G01320


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0001797 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001797_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G01320

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00088750 evm_27.TU.AmTr_v1... Protein TSS OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Adi_g003682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035059 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g071573 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g077986 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g101355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g15019 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21002 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14003 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14883 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g21641 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g26135 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g29315 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g08477 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Aop_g26369 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene56297.t1 Aspi01Gene56297 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G017100.1 Ceric.12G017100 not classified & original description: pacid=50600997... 0.04 OrthoFinder output from all 47 species
Ceric.26G072500.1 Ceric.26G072500 not classified & original description: pacid=50600348... 0.05 OrthoFinder output from all 47 species
Dac_g23136 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g31539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g34188 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g37502 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21691 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01017381001 No alias Protein TSS OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01023693001 No alias Protein TSS OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
GSVIVT01023694001 No alias Protein TSS OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
GSVIVT01027120001 No alias Protein TSS OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_14168 No alias Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.03 OrthoFinder output from all 47 species
LOC_Os04g55230.1 LOC_Os04g55230 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.04 OrthoFinder output from all 47 species
LOC_Os07g23990.1 LOC_Os07g23990 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.08 OrthoFinder output from all 47 species
Len_g08747 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03522 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g38813 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10436966g0010 No alias Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath : 111.0) 0.03 OrthoFinder output from all 47 species
Msp_g42756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07995 No alias substrate adaptor of SCF E3 ubiquitin ligase *(PCH) &... 0.03 OrthoFinder output from all 47 species
Ore_g25092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g56916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16281 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015275 No alias not classified & original description: CDS=1-5475 0.03 OrthoFinder output from all 47 species
Sam_g03731 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g38446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g44149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo10032 No alias Protein TSS OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo442478 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Solyc01g095900.4.1 Solyc01g095900 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.11 OrthoFinder output from all 47 species
Solyc05g050630.4.1 Solyc05g050630 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.1 OrthoFinder output from all 47 species
Solyc06g068230.4.1 Solyc06g068230 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.05 OrthoFinder output from all 47 species
Solyc07g006030.4.1 Solyc07g006030 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.04 OrthoFinder output from all 47 species
Spa_g02169 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g22658 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g47021 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g50937 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56345 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006762_P001 Zm00001e006762 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.04 OrthoFinder output from all 47 species
Zm00001e016102_P002 Zm00001e016102 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.03 OrthoFinder output from all 47 species
Zm00001e033372_P001 Zm00001e033372 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0016556 mRNA modification RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
BP GO:0009646 response to absence of light IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009895 negative regulation of catabolic process IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010239 chloroplast mRNA processing IEP HCCA
BP GO:0010304 PSII associated light-harvesting complex II catabolic process IEP HCCA
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031330 negative regulation of cellular catabolic process IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
CC GO:0031897 Tic complex IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043487 regulation of RNA stability IEP HCCA
BP GO:0043488 regulation of mRNA stability IEP HCCA
BP GO:0043489 RNA stabilization IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045037 protein import into chloroplast stroma IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0048255 mRNA stabilization IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0061013 regulation of mRNA catabolic process IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090056 regulation of chlorophyll metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901259 chloroplast rRNA processing IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902369 negative regulation of RNA catabolic process IEP HCCA
BP GO:1902373 negative regulation of mRNA catabolic process IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
BP GO:1903312 negative regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR033646 CLU-central 698 843
IPR028275 CLU_N 45 115
No external refs found!