- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LHCA3
Description : component *(LHCa3) of LHC-I complex & original description: none
Gene families : OG0003350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003350_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pnu_g28252 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00061p00059490 | LHCA3,... | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.11 | OrthoFinder output from all 47 species | |
| AT1G61520 | LHCA3 | photosystem I light harvesting complex gene 3 | 0.12 | OrthoFinder output from all 47 species | |
| Adi_g042980 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Adi_g075747 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Aev_g02928 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aev_g03708 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g05970 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Ala_g34376 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Als_g11489 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aob_g03906 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g03958 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aob_g09708 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g18182 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g06037 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aspi01Gene41799.t1 | LHCA3, Aspi01Gene41799 | component *(LHCa3) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene65876.t1 | LHCA3, Aspi01Gene65876 | component *(LHCa3) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009434 | LHCA3 | component *(LHCa3) of LHC-I complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g13564 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.18G011800.1 | LHCA3, Ceric.18G011800 | component *(LHCa3) of LHC-I complex & original... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.18G011900.1 | LHCA3, Ceric.18G011900 | component *(LHCa3) of LHC-I complex & original... | 0.1 | OrthoFinder output from all 47 species | |
| Cre11.g467573 | LHCA3 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g34473 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g10600 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Dcu_g33769 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Dde_g13335 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Ehy_g23566 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| GSVIVT01019377001 | LHCA3 | Photosystem I chlorophyll a/b-binding protein 3-1,... | 0.09 | OrthoFinder output from all 47 species | |
| Gb_10163 | LHCA3 | component LHCa3 of LHC-I complex | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os02g10390.1 | LHCA3, LOC_Os02g10390 | component LHCa3 of LHC-I complex | 0.08 | OrthoFinder output from all 47 species | |
| Len_g17078 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| MA_815900g0010 | LHCA3 | component LHCa3 of LHC-I complex | 0.09 | OrthoFinder output from all 47 species | |
| Mp4g00930.1 | LHCA3 | component LHCa3 of LHC-I complex | 0.13 | OrthoFinder output from all 47 species | |
| Msp_g02710 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Nbi_g27710 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Ore_g03894 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g30216 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g33396 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g15180 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Pp3c16_16040V3.1 | LHCA3, Pp3c16_16040 | photosystem I light harvesting complex gene 3 | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c27_7010V3.1 | LHCA3, Pp3c27_7010 | photosystem I light harvesting complex gene 3 | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c6_22090V3.1 | LHCA3, Pp3c6_22090 | photosystem I light harvesting complex gene 3 | 0.03 | OrthoFinder output from all 47 species | Export |
| Ppi_g19878 | LHCA3 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g44081 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0073.g017111 | LHCA3 | component *(LHCa3) of LHC-I complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g01310 | No alias | component *(LHCa3) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g06804 | No alias | component *(LHCa3) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g47244 | No alias | component *(LHCa3) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Smo160411 | LHCA3 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc10g007690.3.1 | LHCA3, Solyc10g007690 | component LHCa3 of LHC-I complex | 0.11 | OrthoFinder output from all 47 species | |
| Solyc12g011280.2.1 | LHCA3, Solyc12g011280 | component LHCa3 of LHC-I complex | 0.09 | OrthoFinder output from all 47 species | |
| Spa_g07265 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Tin_g01697 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| MF | GO:0005215 | transporter activity | IEP | HCCA |
| MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0005261 | monoatomic cation channel activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006536 | glutamate metabolic process | IEP | HCCA |
| BP | GO:0006537 | glutamate biosynthetic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
| BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008324 | monoatomic cation transmembrane transporter activity | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | HCCA |
| BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010109 | regulation of photosynthesis | IEP | HCCA |
| MF | GO:0010181 | FMN binding | IEP | HCCA |
| BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
| MF | GO:0010242 | oxygen evolving activity | IEP | HCCA |
| MF | GO:0015075 | monoatomic ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015252 | proton channel activity | IEP | HCCA |
| MF | GO:0015267 | channel activity | IEP | HCCA |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015930 | glutamate synthase activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0042549 | photosystem II stabilization | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 134 | 313 |
| No external refs found! |