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  5. Pnu_g25528

Pnu_g25528


Description : not classified & original description: none


Gene families : OG0000510 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000510_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g25528
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00182670 evm_27.TU.AmTr_v1... F-box protein At1g67340 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g011762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g36454 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12685 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g17025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15991 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene15724.t1 Aspi01Gene15724 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20353.t1 Aspi01Gene20353 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G046200.1 Ceric.28G046200 not classified & original description: pacid=50570096... 0.03 OrthoFinder output from all 47 species
Dac_g13030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02435 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06870 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_12108 No alias F-box protein At1g67340 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_35548 No alias F-box protein At1g67340 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g30300.1 LOC_Os02g30300 F-box protein At1g67340 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
LOC_Os04g31610.1 LOC_Os04g31610 F-box protein At1g67340 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os11g29710.1 LOC_Os11g29710 F-box protein At1g67340 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g08620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436160g0020 No alias F-box protein At1g67340 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp2g21990.1 No alias F-box protein At1g67340 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Nbi_g01939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26207 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06780 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g52634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009923 No alias not classified & original description: CDS=105-1622 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013455 No alias not classified & original description: CDS=833-2278 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021897 No alias not classified & original description: CDS=923-2077 0.03 OrthoFinder output from all 47 species
Smo171141 No alias F-box protein At1g67340 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Spa_g31042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e014568_P002 Zm00001e014568 F-box protein At1g67340 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e018821_P001 Zm00001e018821 F-box protein At1g67340 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e028443_P002 Zm00001e028443 F-box protein At1g67340 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002893 Znf_MYND 342 383
No external refs found!