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  5. Pnu_g20972

Pnu_g20972 (LPA3)


Aliases : LPA3

Description : protein involved in PS-II assembly *(LPA3) & original description: none


Gene families : OG0005820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g20972
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00143330 LPA3,... Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
AT1G73060 LPA3 Low PSII Accumulation 3 0.04 OrthoFinder output from all 47 species
Adi_g021642 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.02 OrthoFinder output from all 47 species
Aev_g01102 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.02 OrthoFinder output from all 47 species
Aob_g08359 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
Aop_g10058 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.04 OrthoFinder output from all 47 species
Cba_g08348 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.24 No alias Photosynthesis.photophosphorylation.photosystem... 0.01 OrthoFinder output from all 47 species
Dcu_g14491 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
Dde_g09855 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g15282 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01015969001 LPA3 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
LOC_Os02g02520.1 LPA3, LOC_Os02g02520 LPA3 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
Len_g30874 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g05945 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g14236 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Ore_g06511 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
Ore_g14656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02119 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008847 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.03 OrthoFinder output from all 47 species
Smo166238 LPA3 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
Solyc06g068480.3.1 LPA3, Solyc06g068480 LPA3 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species
Spa_g01721 LPA3 protein involved in PS-II assembly *(LPA3) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e013465_P002 LPA3, Zm00001e013465 LPA3 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR018962 DUF1995 90 352
No external refs found!